PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG467100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YB
Protein Properties Length: 262aa    MW: 27739.8 Da    PI: 8.3005
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG467100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB163.33.5e-5132125497
                NF-YB   4 qdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 
                           dr++ ianv+rim++vlP++akis+daket+qecvse+isf+t+ea+++cqre+rkti+++d+lwa++ lGf+dyvepl+vyl++yre+
  Pavir.1NG467100.1.p  32 FDRLMQIANVIRIMRRVLPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSRLGFDDYVEPLSVYLHRYREF 121
                          69**************************************************************************************** PP

                NF-YB  94 egek 97 
                          ege 
  Pavir.1NG467100.1.p 122 EGEA 125
                          *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.7E-4432126IPR009072Histone-fold
SuperFamilySSF471134.35E-3533128IPR009072Histone-fold
PfamPF008082.6E-243699IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006157.9E-176381No hitNo description
PROSITE patternPS0068506682IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006157.9E-1782100No hitNo description
PRINTSPR006157.9E-17101119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MDPASGFLPS GAANGTAAAG GAGSSIRRRR RFDRLMQIAN VIRIMRRVLP SHAKISDDAK  60
ETIQECVSEY ISFITGEANE RCQREQRKTI TAEDVLWAMS RLGFDDYVEP LSVYLHRYRE  120
FEGEARGVVG LGVPGAARGG DHHHHPSMAL KSRAPGAMSP PHHHDMQLHA SMYGGAPAVP  180
PPPGGPHHGH GFVGMPHHHG GGGGHQSYPY EAAYAGEHAM AAYYGSAAAY GAPGSGSSGG  240
SASRTPQGGS FEHQHPFASY K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A1e-5630120797NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG467100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432570.0AC243257.1 Panicum virgatum clone PV_ABa103-H05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792076.11e-112nuclear transcription factor Y subunit B-like
TrEMBLA0A2T7FBI61e-122A0A2T7FBI6_9POAL; Uncharacterized protein
STRINGPavir.Aa01090.1.p1e-165(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.28e-59nuclear factor Y, subunit B6