PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1NG467300.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NF-YB

Protein Properties

Length: 120aa MW: 12508.5 Da PI: 11.0954

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1NG467300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	67.4	2.7e-21	62	118	7	63
NF-YB 7 flPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktin 63 lP+an++r+m++v+P+ k+s ak+++++c +ef++fv++eas+k+q+++r+ i+ Pavir.1NG467300.1.p 62 GLPMANLVRLMRQVIPKGVKVSARAKHLTHDCTVEFVGFVAGEASEKAQAQHRRIIS 118 69****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.2E-14	60	119	IPR009072	Histone-fold
Pfam	PF00808	1.4E-12	62	119	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	3.39E-12	63	119	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 120 aa Download sequence Send to blast
MDKALSSAVT TKLRKIERMG RKAKRGGAKK GVRDTEKTKV APADDCASPG GEGGSTASAA 60 AGLPMANLVR LMRQVIPKGV KVSARAKHLT HDCTVEFVGF VAGEASEKAQ AQHRRIISP*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in developing kernels. {ECO:0000269\|PubMed:11971906}.

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May act through association with MADS-box proteins. May regulate the expression of genes involved in flowering. {ECO:0000269\|PubMed:11971906}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1NG467300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243257	1e-101	AC243257.1 Panicum virgatum clone PV_ABa103-H05, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822765.1	5e-62	nuclear transcription factor Y subunit B-1-like
Swissprot	Q6Z348	4e-22	NFYB1_ORYSJ; Nuclear transcription factor Y subunit B-1
TrEMBL	A0A2T8KXK0	1e-60	A0A2T8KXK0_9POAL; Uncharacterized protein
STRING	Pavir.Aa00694.1.p	3e-67	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13659	26	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09030.1	6e-14	nuclear factor Y, subunit B4

Link Out ? help Back to Top
Phytozome	Pavir.1NG467300.1.p