PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG473000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 264aa    MW: 27220.4 Da    PI: 7.0193
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG473000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.3e-20117167155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GVr+++ +g+W+AeIrdp     +  +r +lg+f+tae+Aa+a++ a+ +++g
  Pavir.1NG473000.1.p 117 SKYRGVRRRP-WGKWAAEIRDP-----HraARKWLGTFDTAEDAARAYDIAAVEFRG 167
                          89********.**********7.....338***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-12117167IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-23117176IPR016177DNA-binding domain
CDDcd000181.14E-29117174No hitNo description
PROSITE profilePS5103225.515118175IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-30118176IPR001471AP2/ERF domain
SMARTSM003809.1E-35118181IPR001471AP2/ERF domain
PRINTSPR003673.2E-11119130IPR001471AP2/ERF domain
PRINTSPR003673.2E-11141157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MAPRLERGGF HLPNAEQENS LLLRALISVV SGDNAVPALL PEEAGAAAPA LAVAAAAPAP  60
AAAYAGCGAD GCAGGCEPLA AAGTGSSSDS EDGGECSASR AVTGGVGKRG RRRMRVSKYR  120
GVRRRPWGKW AAEIRDPHRA ARKWLGTFDT AEDAARAYDI AAVEFRGQRA KLNFPAAQAA  180
AAAAAPAPAS SWAPTSTYHR LPPQPLPESL HENCGSNAAS PVHVAPAPAG QQSARSAEKE  240
QDIWDGLNEI MMMDDGSFWS SMP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-201181751472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107125KRGRRRMRVSKYRGVRRRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG473000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9730588e-71EU973058.1 Zea mays clone 392659 ethylene-responsive element binding protein 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806850.11e-139ethylene-responsive transcription factor ERF109-like
TrEMBLA0A2S3GTV81e-137A0A2S3GTV8_9POAL; Uncharacterized protein
STRINGSi018144m1e-119(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.18e-16ethylene response factor 110