PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG474200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 200aa    MW: 20658.9 Da    PI: 4.1398
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG474200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.22.4e-142441055
                  AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +++g+Wv+eIr p   ++++r++lg++ tae Aa+a++aa ++l+g
  Pavir.1NG474200.1.p  2 RSWGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLKG 44
                         57**********9...336************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.5E-25152IPR001471AP2/ERF domain
SMARTSM003802.3E-25158IPR001471AP2/ERF domain
CDDcd000182.59E-13154No hitNo description
PROSITE profilePS5103218.413152IPR001471AP2/ERF domain
PfamPF008474.6E-8244IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-15253IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MRSWGSWVSE IRAPNQKTRI WLGSYSTAEA AARAYDAALL CLKGSAADLN FPVHLPFHIP  60
AAAMSPKSIQ RVAAAAAASA GGCSPLQAGA PCYPAAAAIN AATTPPCSYG DTSSGVSSPE  120
TGSGAGQYYE TAHDDVDVTG DADLAALADI EAFFQSPKCM EYALMDPCSS FFASAPMATD  180
ASNEWEEGEI NLWSFSSVN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG474200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0835321e-112BT083532.1 Zea mays full-length cDNA clone ZM_BFb0008I08 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954039.11e-107ethylene-responsive transcription factor ERF014
TrEMBLA0A368PRU61e-106A0A368PRU6_SETIT; Uncharacterized protein
STRINGPavir.J29574.1.p1e-114(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31973469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.11e-23ERF family protein