PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG476400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 237aa    MW: 24607.3 Da    PI: 4.7056
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG476400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.2e-183483255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +ykGVr ++ +g+Wv+eIr p   ++++r++lg++ tae Aa+a++aa ++l+g
  Pavir.1NG476400.1.p 34 QYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLKG 83
                         69****998.**********9...336************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.8E-303391IPR001471AP2/ERF domain
PROSITE profilePS5103221.5753491IPR001471AP2/ERF domain
SMARTSM003804.0E-343497IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-193492IPR016177DNA-binding domain
PfamPF008475.2E-113483IPR001471AP2/ERF domain
CDDcd000182.84E-173493No hitNo description
PRINTSPR003675.6E-93546IPR001471AP2/ERF domain
PRINTSPR003675.6E-95773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0034605Biological Processcellular response to heat
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071497Biological Processcellular response to freezing
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MVKGGAHQLQ TDAAAEANAA AAARQHGCGG GKRQYKGVRM RSWGSWVSEI RAPNQKTRIW  60
LGSYSTAEAA ARAYDAALLC LKGSAADLNF PVHLPFHIPA AAMSPKSIQR VAAAAAANAG  120
CSPLQAGAPY YPAAAAINSA TPPCSYGDAS SGASSPETGN AGQYYETAHD DMDVTGDADL  180
AALADIEAFF QSPKCMEYAM MDPCSSFFAP APMATDAANE WEEEGEINLW SFSSVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-142791772Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00156DAPTransfer from AT1G21910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG476400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0835321e-128BT083532.1 Zea mays full-length cDNA clone ZM_BFb0008I08 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954039.11e-128ethylene-responsive transcription factor ERF014
TrEMBLA0A368PRU61e-126A0A368PRU6_SETIT; Uncharacterized protein
STRINGPavir.J02555.1.p1e-173(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31973469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77640.17e-29ERF family protein