PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG479400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GeBP
Protein Properties Length: 303aa    MW: 32704 Da    PI: 9.9956
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG479400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57337.47.2e-12118183468
               DUF573   4 qrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkk 68 
                          ++ ws+ De +lL + + f++++g  p   d+ ++++ v +sis ++ +  +  K++rLK Kf++ 
  Pavir.1NG479400.1.p 118 KKYWSDADEFTLLAAAVAFRERNGRAPRLpDMAELFDSVCDSISPDIDQFMVYYKMKRLKSKFQHS 183
                          678**********************88877*********************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.9E-10118183IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MSSGRPSASA MDADAPSPPR SKKRPSRKSD SDWSPNPSPP GSPSDHKRRR RTSAESAALA  60
LTAVAARASA ASSDAGGGAI RRSLRPQRRA ARVDGGDGGI QMLGDAAARV GGGRGGVKKY  120
WSDADEFTLL AAAVAFRERN GRAPRLPDMA ELFDSVCDSI SPDIDQFMVY YKMKRLKSKF  180
QHSNCPSDRR LRNLCSILWG VGVVPSSEDD SDAAERRGVP DAAAMMPVVT EVLGEYWKTN  240
ERVMAPVPLE KGLSLLGKKE GRLLETKWRQ QLDEEMQSQM RQHDLAKEVC GLLTDAIKGL  300
GP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.209690.0callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG479400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825361.11e-174uncharacterized protein LOC112900770
RefseqXP_025825369.11e-174uncharacterized protein LOC112900770
RefseqXP_025825375.11e-174uncharacterized protein LOC112900770
TrEMBLA0A2T8KXX41e-173A0A2T8KXX4_9POAL; Uncharacterized protein
STRINGSi017925m1e-167(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26822763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00250.16e-07DNA-binding storekeeper protein-related transcriptional regulator