PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG480500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 589aa    MW: 63329.9 Da    PI: 4.8813
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG480500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.12.4e-30340399159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  Pavir.1NG480500.1.p 340 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILVTTYEGTHNHP 399
                          58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-31325401IPR003657WRKY domain
SuperFamilySSF1182903.14E-27333401IPR003657WRKY domain
PROSITE profilePS5081128.529335401IPR003657WRKY domain
SMARTSM007741.4E-37340400IPR003657WRKY domain
PfamPF031061.1E-26341399IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MMMHTHMAIF FGTLGQQREK GTQANQIEVK SMPSKKKRAA IDLSLERERR EEDRRDGDRR  60
DKDGRVDKEE EQFKEQKEAP KEETGGEEKV VEVVVDQGGD GTKEEIKYRT QQGEEMEEDK  120
QSEEDGSGDD ESDGAGGIRA DDDKVVAVED SGDGDGDHTN SMVQDEVSAM QEEMEKMKEE  180
NRKLRRVVDR TVRDYYELQM KLAAYQQQPA ADEPKEPEVF LTLGATAAAA GFPEPKRKEQ  240
AARRPSVGSD DTDDGKEDLG LSLSLRASSS YEEEKLQEAV RYLDGADGKA KGYALLESSK  300
QLGSPAAGDL AAAGITSQSV NPANRKTRVS VRVRCQGPTM NDGCQWRKYG QKVAKGNPCP  360
RAYYRCTVAP GCPVRKQVQR CLEDMSILVT TYEGTHNHPL PVGATAMAST TSAAATFMLL  420
SSTSSSSSIS EAAGGGSSSA PPYLSPFLLN STSHHSSASP LLSTPSSMPS VASGMNLFGH  480
SSMLTQHQAP DLKYPWSSDP SRGSSSGGLA GSKRPFWSST GGDDKAAATL PDNVSAVMSD  540
PSKFSVAIAA EINSFMGKDG QVMSSKDGES SSSKSSNKWG VVESLPPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-213404011777Probable WRKY transcription factor 4
2ayd_A2e-21327403176WRKY transcription factor 1
2lex_A2e-213404011777Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG480500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827272.10.0probable WRKY transcription factor 9
TrEMBLA0A2S3GTK90.0A0A2S3GTK9_9POAL; Uncharacterized protein
STRINGPavir.Aa00351.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80223446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.15e-50WRKY DNA-binding protein 9