PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG499000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 406aa    MW: 42557.4 Da    PI: 4.9594
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG499000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.15e-18322355134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          C++C+  kTp+WR gp g+ktLCnaCG++y++ +
  Pavir.1NG499000.1.p 322 CTHCQIEKTPQWRAGPLGPKTLCNACGVRYKSGR 355
                          *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004018.2E-16316366IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.76E-14316378No hitNo description
PROSITE profilePS5011411.279316352IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.3E-14320353IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.75E-14321378No hitNo description
PROSITE patternPS003440322347IPR000679Zinc finger, GATA-type
PfamPF003201.1E-15322355IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MASAGFVEEM MREQSLLEAT CGDLFDHIDD LLDFPKEESS ADVLLLDAPA PGSPLSARII  60
DVGGNAPPAP ALEPLPPPAA QEDDAAAGAP VFDAKDVGGH IGSCEDLDMD MAQLEWLSGL  120
FDDASIPHEP AFPGATCAAP IKSSALAANA GVALLPPDKM EDALFRSSSP ISVLEHNSFN  180
ANNNVGSASS SSSSASSSSE SFSGSGGHAW SAPVSPRPEP PVLVIPARAR SKRSRPSAFT  240
PTAEAPTILV PTPMYSSTSS HSDPESIAES NPHQAPPKKK KKAKKPAPPA PTASDADGDN  300
DGDADYEEGG ERSLPQGAVR RCTHCQIEKT PQWRAGPLGP KTLCNACGVR YKSGRLFPEY  360
RPAASPTFVP SIHSNSHKKV VEMRQKAVRS GDPSCDLLQF IRRRD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG499000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807686.10.0GATA transcription factor 8-like
RefseqXP_025807694.10.0GATA transcription factor 8-like
TrEMBLA0A2T8KYD80.0A0A2T8KYD8_9POAL; Uncharacterized protein
STRINGPavir.Aa00151.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51693451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.21e-37GATA family protein