PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG499000.5.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 334aa    MW: 35410.7 Da    PI: 8.4051
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG499000.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.53.8e-18250283134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          C++C+  kTp+WR gp g+ktLCnaCG++y++ +
  Pavir.1NG499000.5.p 250 CTHCQIEKTPQWRAGPLGPKTLCNACGVRYKSGR 283
                          *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.28E-14244306No hitNo description
SMARTSM004018.2E-16244294IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.279244280IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.2E-14248281IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.62E-14249306No hitNo description
PROSITE patternPS003440250275IPR000679Zinc finger, GATA-type
PfamPF003208.6E-16250283IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MRGRSVGAGA TGARFRFWFC SDVAMILLGL QCEDLDMDMA QLEWLSGLFD DASIPHEPAF  60
PGATCAAPIK SSALAANAGV ALLPPDKMED ALFRSSSPIS VLEHNSFNAN NNVGSASSSS  120
SSASSSSESF SGSGGHAWSA PVSPRPEPPV LVIPARARSK RSRPSAFTPT AEAPTILVPT  180
PMYSSTSSHS DPESIAESNP HQAPPKKKKK AKKPAPPAPT ASDADGDNDG DADYEEGGER  240
SLPQGAVRRC THCQIEKTPQ WRAGPLGPKT LCNACGVRYK SGRLFPEYRP AASPTFVPSI  300
HSNSHKKVVE MRQKAVRSGD PSCDLLQFIR RRD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG499000.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807686.10.0GATA transcription factor 8-like
RefseqXP_025807694.10.0GATA transcription factor 8-like
TrEMBLA0A2T8KYD81e-180A0A2T8KYD8_9POAL; Uncharacterized protein
STRINGPavir.Aa00151.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.28e-38GATA family protein