PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1NG547900.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

TCP

Protein Properties

Length: 221aa MW: 22500.3 Da PI: 10.7658

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1NG547900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.1	7.6e-39	31	123	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg. 88 a++k +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ +++s +s++s ++ + Pavir.1NG547900.1.p 31 AVRKAPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStsSPSSLRSTSS-QTTPf 119 789*************************************************************99999888533333333333.22224 PP TCP 89 ...k 89 k Pavir.1NG547900.1.p 120 vlgK 123 4441 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	28.209	37	91	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	4.1E-33	37	123	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MTTRPADGGA AAAAAAADKQ LVPASNGNAL AVRKAPSKDR HSKVDGRGRR IRMPIICAAR 60 VFQLTRELGH KSDGQTIEWL LRQAEPSIIA ATGTGTTPAS FSTSSPSSLR STSSQTTPFV 120 LGKRVRNDAD AEPTVAAPAP GFWALPARAD FGQLWSFAAA PEMMVAAAAA AAPAMAGEAS 180 AARVGNYLPM AQGNLNLLAS FSGGSAPTAT AGRAEEESAR *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.6609	0.0	callus\| leaf\| root\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1NG547900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK240798	1e-118	AK240798.1 Oryza sativa Japonica Group cDNA, clone: J065002G04, full insert sequence.
GenBank	AP004776	1e-118	AP004776.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0452F04.
GenBank	AP014958	1e-118	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	1e-118	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025814152.1	1e-113	transcription factor TCP7-like
Swissprot	Q9FMX2	1e-75	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A2T7FE71	1e-111	A0A2T7FE71_9POAL; Uncharacterized protein
STRING	OMERI02G35320.1	1e-91	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	4e-47	TCP family protein

Link Out ? help Back to Top
Phytozome	Pavir.1NG547900.1.p