PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG554000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 227aa    MW: 25978.6 Da    PI: 11.9813
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG554000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.91.3e-0981120948
                          HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          d +l ++ +++G ++W+++a++mg gR+  +c+ rw+ +l
  Pavir.1NG554000.1.p  81 DARLERLAREHGFRHWRRVAARMGSGRSSRECRGRWRHHL 120
                          57999*******************************9886 PP
2Myb_DNA-binding23.81.1e-07128171348
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          ++T+ +d+ l+++  ++Gg+ W+  +r +g gRt    + rw+ ++
  Pavir.1NG554000.1.p 128 PFTARDDDDLARLYVRHGGR-WRDMSRAVG-GRTSRVMRRRWREFR 171
                          79******************.*********.***********9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.19974124IPR017930Myb domain
SMARTSM007170.02581122IPR001005SANT/Myb domain
PfamPF002494.5E-881119IPR001005SANT/Myb domain
SuperFamilySSF466892.53E-1581167IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-1181131IPR009057Homeodomain-like
CDDcd001676.76E-781120No hitNo description
SMARTSM007170.0012125173IPR001005SANT/Myb domain
CDDcd001670.00164128170No hitNo description
PROSITE profilePS500906.864128171IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.6E-8132169IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MRSREEGSTL YIAGAASLRS CMPYPQPRAG QVVALWGRRA RFKDDKQASV RASTCHVVRH  60
RRPGGIGDAA CPPHPAAAGV DARLERLARE HGFRHWRRVA ARMGSGRSSR ECRGRWRHHL  120
ARHVYHRPFT ARDDDDLARL YVRHGGRWRD MSRAVGGRTS RVMRRRWREF RDSDAFLSKL  180
WKPVTVSTEP SSQQQQQQQH LRLGQCCLLL DTDALLVASF RNLLIQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG554000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821894.12e-68transcription factor MYB73-like
TrEMBLA0A2T7F8163e-67A0A2T7F816_9POAL; Uncharacterized protein
STRINGPavir.J27942.1.p1e-159(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83601346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.19e-09myb domain protein r1