PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG561100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 413aa    MW: 45581.9 Da    PI: 6.3208
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG561100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.38.6e-34244298155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k r+rWtpeLHerFv+av++LGGsekAtPk++ ++mkv+gLt++hvkSHLQkYR+
  Pavir.1NG561100.1.p 244 KSRIRWTPELHERFVDAVNKLGGSEKATPKAVQKVMKVEGLTIYHVKSHLQKYRT 298
                          68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.625241301IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.2E-31242299IPR009057Homeodomain-like
SuperFamilySSF466898.78E-18243300IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-25244299IPR006447Myb domain, plants
PfamPF002493.1E-10248297IPR001005SANT/Myb domain
PfamPF143796.7E-15332374IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MGTACSHRST MNQLYNGTVP PCLSSAIIVV PALSEVSFPS FPEQRSSYGE SELPISHVTS  60
FGNSMAAQDA MSTCMLASNF TSDLHANNKS SDLKLCSGPY VTEPSDPDTQ LSSTHSSLLH  120
NSRPLMMDFP EVSEQISSNQ EQLQGLFDYA ASVDFPNPQN VTAFGQQVQA TMTIDPNTNV  180
ALANEWFSSG SSMVLHKNTV DARSATRATP KISPYFRTQR SGPNPVNCDE LCSDNLPSSN  240
TAPKSRIRWT PELHERFVDA VNKLGGSEKA TPKAVQKVMK VEGLTIYHVK SHLQKYRTVQ  300
HRPESSNGVP GWRSNQTDEA STLQLKGTGN VEGLMAQISL QKQLHEQLEI QRKLQLQVEE  360
HSRYLEVIIA KQNESLKKLG ALPGFQDRFL QVLDDNKERE EWAVCTHSAE DR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A9e-28244302260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B9e-28244302260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A9e-28244302260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C9e-28244302260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D9e-28244302260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F9e-28244302260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H9e-28244302260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J9e-28244302260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG561100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812111.10.0protein PHOSPHATE STARVATION RESPONSE 1-like isoform X3
TrEMBLA0A3L6QGF20.0A0A3L6QGF2_PANMI; Uncharacterized protein
STRINGPavir.Aa00126.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54942526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28610.12e-50phosphate starvation response 1