PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.2KG023000.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 354aa MW: 37613.7 Da PI: 6.4441

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2KG023000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	62.4	1.5e-19	18	153	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratk..sgyWka 85 p f hP+d lv yL++ v++ + +++ +d+y +eP +L + ++ +e+ wyf s+ ++k+++g+rk r+++ +g W+ Pavir.2KG023000.1.p 18 PAFDSHPSDLVLVRSYLRPWVAQGVRPPGAFVHAADLYAAEPGELARrfraaVARDGERAWYFLSPLRTKSPRGRRKARTVAggAGWWHG 107 56778***************999888678**********85355544444788****************66534788* PP NAM 86 tgkdkevlsk..kgelvglkktLvfy.kgrapkgektdWvmheyrl 128 ++vl+ ++++vg ++++ f +g + +++t W+m e rl Pavir.2KG023000.1.p 108 EAGPRPVLDPldGRRKVGHRQSFSFMrRGPDGAPVRTGWIMVELRL 153 ******99989999******445666778*****9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.8E-29	13	182	IPR003441	NAC domain
PROSITE profile	PS51005	32.236	16	182	IPR003441	NAC domain
Pfam	PF02365	1.9E-11	18	153	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MTPRPPMFHA PLATSPAPAF DSHPSDLVLV RSYLRPWVAQ GVRPPGAFVH AADLYAAEPG 60 ELARRFRAAV ARDGERAWYF LSPLRTKSPR GRRKARTVAG GAGWWHGEAG PRPVLDPLDG 120 RRKVGHRQSF SFMRRGPDGA PVRTGWIMVE LRLHDEDDGD GDGAAGIGDQ LEGLVLCKVY 180 RSPRHPGHAD GDDLEESCSA AAAPAPAGRH SNVVTEDDGS SDSPLLTADD ETSGAAAATV 240 LGPKEKTADD ENETSGATTA AARGDEEEKK AADDEDSSAS TPERKRAKTA DDETAGAAPE 300 RKRMAGALAT QQLHCPQCGF HLGALQAVVS PAKSKSETQT GIEIRRFRDP KQA*

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MTPRPPMFHA PLATSPAPAF DSHPSDLVLV RSYLRPWVAQ GVRPPGAFVH AADLYAAEPG  60
ELARRFRAAV ARDGERAWYF LSPLRTKSPR GRRKARTVAG GAGWWHGEAG PRPVLDPLDG  120
RRKVGHRQSF SFMRRGPDGA PVRTGWIMVE LRLHDEDDGD GDGAAGIGDQ LEGLVLCKVY  180
RSPRHPGHAD GDDLEESCSA AAAPAPAGRH SNVVTEDDGS SDSPLLTADD ETSGAAAATV  240
LGPKEKTADD ENETSGATTA AARGDEEEKK AADDEDSSAS TPERKRAKTA DDETAGAAPE  300
RKRMAGALAT QQLHCPQCGF HLGALQAVVS PAKSKSETQT GIEIRRFRDP KQA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2KG023000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025800219.1	1e-177	NAC domain-containing protein 68-like
TrEMBL	A0A3L6QN70	1e-174	A0A3L6QN70_PANMI; Uncharacterized protein
STRING	Pavir.J21487.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP19662	7	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	2e-13	NAC domain containing protein 2

Link Out ? help Back to Top
Phytozome	Pavir.2KG023000.1.p