PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG040900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 199aa    MW: 21008.5 Da    PI: 8.5385
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG040900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.51.7e-0990137148
                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                          e++l+r +r+++NRe+ArrsR+ ++++ eeLe+ +++L a+ +aL+ +
  Pavir.2KG040900.1.p  90 EERLRRLKRRISNRESARRSRAQRRQRAEELERAAEALRAQGRALAAR 137
                          789**************************************9999866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.2E-787137No hitNo description
SMARTSM003381.1E-690154IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.62292137IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.91E-594140No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MLSLDEVMEL DFAGALPDMD VGSGFGFDFD LDLDFDTTMS GAGGGFDFDD MATFDTTIKC  60
GAAAASTVTG GTTSPVDTSA NAGSGADDEE ERLRRLKRRI SNRESARRSR AQRRQRAEEL  120
ERAAEALRAQ GRALAARRDA AAARVLVVRL QNARLGAEAG ALRRRLREAQ GQAALLLALA  180
RARLAAARGR GAAGMMTS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG040900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804125.12e-14bZIP transcription factor 60-like
TrEMBLA0A1E5VU062e-33A0A1E5VU06_9POAL; Uncharacterized protein
STRINGSi032429m7e-27(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3211444