PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG088100.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 186aa    MW: 20416.4 Da    PI: 9.1288
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG088100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.17.7e-093579554
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                         h+++Er RR+ri +++  L+el+P+       K + a++L +  +Y+k L
  Pavir.2KG088100.2.p 35 HSIAERLRRERIAERMRALQELVPNT-----NKTDRAAMLDEILDYVKFL 79
                         99***********************7.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.96E-102884No hitNo description
SuperFamilySSF474592.49E-152889IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.773079IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-143290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-63579IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-93685IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MFHAQPKPGE GAMAPQPPAP RPKVRARRGQ ATDPHSIAER LRRERIAERM RALQELVPNT  60
NKTDRAAMLD EILDYVKFLR LQVKVLSMSR LGGAGAVAQL VSDIPLSVKG EASDSGSTQQ  120
IWEKWSTDGT EKQVTKLMEE DIGAAMQFLQ SKALCMMPIS LAMAIYDTQH PQDGHSLKPE  180
PNTSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13944RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.23770.0callus| leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG088100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0960750.0FP096075.1 Phyllostachys edulis cDNA clone: bphyem116n19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804227.11e-130transcription factor UNE12
SwissprotO227681e-77UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A3L6QWS21e-129A0A3L6QWS2_PANMI; Uncharacterized protein
STRINGPavir.J03221.1.p1e-132(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.38e-67bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]