PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG088100.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 253aa    MW: 26649.1 Da    PI: 5.2969
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG088100.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.31.3e-08102146554
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          h+++Er RR+ri +++  L+el+P+       K + a++L +  +Y+k L
  Pavir.2KG088100.3.p 102 HSIAERLRRERIAERMRALQELVPNT-----NKTDRAAMLDEILDYVKFL 146
                          99***********************7.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.84E-1595156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.7797146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-14100157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.86E-10101151No hitNo description
PfamPF000105.4E-6102146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-9103152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MAGQQPPPGG AEDDFLEHFF AFPSAASAGA GGGHAGAGAG AGLHGGDHPF PLALSLDAAA  60
EASAKQDRDP VQLAGLFPPV FGGGVQQPHL RGPPPPQATD PHSIAERLRR ERIAERMRAL  120
QELVPNTNKT DRAAMLDEIL DYVKFLRLQV KVLSMSRLGG AGAVAQLVSD IPLSVKGEAS  180
DSGSTQQIWE KWSTDGTEKQ VTKLMEEDIG AAMQFLQSKA LCMMPISLAM AIYDTQHPQD  240
GHSLKPEPNT SS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106111RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.23771e-141callus| leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG088100.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0960751e-159FP096075.1 Phyllostachys edulis cDNA clone: bphyem116n19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804227.11e-150transcription factor UNE12
SwissprotO227685e-68UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A2S3GW171e-148A0A2S3GW17_9POAL; Uncharacterized protein
STRINGPavir.J03221.1.p1e-157(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.35e-64bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]