PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.2KG092000.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 152aa MW: 17547.9 Da PI: 10.0709

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2KG092000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	27.2	1.2e-08	30	84	28	90
FAR1 28 itkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++f+Cs+ gk+ ++ k+ ++++t+C l ++++ ++ w+v ++eHnH+l+ Pavir.2KG092000.1.p 30 QLGQEFNCSCGGKPGDNLKT--------TSSKTECPTLLWLSRTGNNGWVVVAHVSEHNHALS 84 46789*******999888........899****************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-5	31	84	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MGVWFWHTER GKRYSNNRVN RKLPDDERYQ LGQEFNCSCG GKPGDNLKTT SSKTECPTLL 60 WLSRTGNNGW VVVAHVSEHN HALSNSYGEK KQWPSHYHLD KYTKELVRML RENNVGITKL 120 YSILGNFFGS MEKVPTTKRS LKNLCQKINR E*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2KG092000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010231466.1	5e-42	uncharacterized protein LOC104582684 isoform X1
TrEMBL	A0A3L6PZI2	9e-64	A0A3L6PZI2_PANMI; Uncharacterized protein
STRING	Pavir.Bb01682.1.p	9e-71	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP619	19	91

Link Out ? help Back to Top
Phytozome	Pavir.2KG092000.1.p