PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG101800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 350aa    MW: 36645.1 Da    PI: 6.1853
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG101800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56e-17182230455
                  AP2   4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           GVr ++ +g+++AeIrd +    +  r+++g+f+t+e Aa a+++a+ +++g
  Pavir.2KG101800.1.p 182 IGVRKRP-WGKYAAEIRDSTR---SgERVWIGTFDTPEAAALAYDQAAYSMRG 230
                          6******.**********322...35*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.048180238IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-20181240IPR016177DNA-binding domain
PRINTSPR003673.7E-7181192IPR001471AP2/ERF domain
PfamPF008474.8E-12182230IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-27183239IPR001471AP2/ERF domain
CDDcd000183.66E-14183239No hitNo description
SMARTSM003809.6E-30183244IPR001471AP2/ERF domain
PRINTSPR003673.7E-7204220IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MEPHFSSSYY YGGHAVTAAA AAYAHCDSHY SSLQQHYDGG AMDASAGFQP FSTYDPHTYS  60
GDYYHSSSSA ASWPSSSSSG AAPSNHHQMP QLLHFGGGMV DDECYSYQVD GVGVSDMDRF  120
SALMGAASIS TTTSTSNSSS ASSATARPGA VDGGSSSGGC GHFLPQAAGH QAADADDGPP  180
LIGVRKRPWG KYAAEIRDST RSGERVWIGT FDTPEAAALA YDQAAYSMRG PAAVLNFPVE  240
HVQESLRALG LAGGEDSPVM ALKRRHCIRK RLPAKSKKAA AGKDQTAAAP TSRHGHAKRN  300
QLAAAPDPAA GVLELEDLGA DYLEELLALY PSNEHPFSSD HLCHPFTDA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-261832411775Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG101800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278831e-101KJ727883.1 Zea mays clone pUT5976 AP2-EREBP transcription factor (EREB166) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801315.11e-132ethylene-responsive transcription factor 2-like
TrEMBLA0A2S3GWC01e-131A0A2S3GWC0_9POAL; Uncharacterized protein
STRINGPavir.Bb00652.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06160.12e-31octadecanoid-responsive Arabidopsis AP2/ERF 59