PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG137100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 146aa    MW: 16476.7 Da    PI: 8.3759
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG137100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.44.1e-182256135
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                         C++C+tt T+lWR+gp g k+LCnaCGl+yr+kgl
  Pavir.2KG137100.1.p 22 CTQCHTTVTSLWRSGPFGRKSLCNACGLRYRRKGL 56
                         ********************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.42E-131457No hitNo description
PROSITE profilePS5011413.0861672IPR000679Zinc finger, GATA-type
SMARTSM004014.1E-131668IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.7E-152056IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.05E-132155No hitNo description
PROSITE patternPS0034402247IPR000679Zinc finger, GATA-type
PfamPF003203.8E-162256IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MAVDPSCQKV VISLDQNKSK ICTQCHTTVT SLWRSGPFGR KSLCNACGLR YRRKGLEAQE  60
LEREEDKWKN TRRINRVRTR KVTELYENGD NRKKNPNEDQ EVAVSTTLTT IDCGNELMLK  120
QIEQHGEEAV TGAIILMDFT GTTLS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG137100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGPavir.Ba03329.1.p9e-39(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18253810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.15e-12GATA transcription factor 16