PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG140000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 501aa    MW: 53583.9 Da    PI: 4.7684
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG140000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM63.94.9e-20121451128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkd 89 
                          lp+++ F P+de  v +yL +++ g + +++  i e d +++ Pw+L  + +++++e +f ++ + +  +g+r++r  +  g W+ + + 
  Pavir.2KG140000.1.p  12 LPACLVFAPEDEVAVEYYLIPRLLGWPPQMDGLILEDDPLSAPPWELL-ERNGRKDEAFFLAEGQARCGKGTRQKRtCAGGGWWEGQKTC 100
                          578899************************999**************7.445677799******************44556666644332 PP

                  NAM  90 kevlsk........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           e  +k        ++e+ + kk L f+ g  +kg +t Wvmhey++
  Pavir.2KG140000.1.p 101 AEG-NKlrfpggggDKEVAWHKKALNFHGGGGEKG-STGWVMHEYAV 145
                          222.223567888888889*********8888887.9********86 PP
2NAM72.88.7e-231823111128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk. 88 
                          lppG+ F P+d ++v +yL +++ g++l+l+  i + d +++ Pw+L ++ ++ +++ +fF+  + ++ +g+r++r  +  g+W+   + 
  Pavir.2KG140000.1.p 182 LPPGYLFAPEDGDVVENYLLRRILGQPLPLDGLILDDDPLSAPPWELLAR-NGCRDDAFFFTLGQARSGKGSRQRRtCAGGGFWNGERNc 270
                          79****************************999**************733.4445689******************77789***965542 PP

                  NAM  89 .dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           d e l+   + e+   kk L f +g ++   +t Wvmhey++
  Pavir.2KG140000.1.p 271 aDGEKLRVpgGAEVARRKKALSFQEGGEKA--STGWVMHEYAI 311
                          232222224477778999******887777..8********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.1E-263163IPR003441NAC domain
PROSITE profilePS5100524.9812164IPR003441NAC domain
PfamPF023651.4E-1116144IPR003441NAC domain
SuperFamilySSF1019418.63E-28176316IPR003441NAC domain
PROSITE profilePS5100526.582182346IPR003441NAC domain
PfamPF023655.2E-15183310IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MEMAAALGVA ELPACLVFAP EDEVAVEYYL IPRLLGWPPQ MDGLILEDDP LSAPPWELLE  60
RNGRKDEAFF LAEGQARCGK GTRQKRTCAG GGWWEGQKTC AEGNKLRFPG GGGDKEVAWH  120
KKALNFHGGG GEKGSTGWVM HEYAVTASED LARSPLRLYH IRRSGYGRKQ GGAMEVPRAL  180
GLPPGYLFAP EDGDVVENYL LRRILGQPLP LDGLILDDDP LSAPPWELLA RNGCRDDAFF  240
FTLGQARSGK GSRQRRTCAG GGFWNGERNC ADGEKLRVPG GAEVARRKKA LSFQEGGEKA  300
STGWVMHEYA ITAPDHLAES GHGQKRKRGE ADSLADEAAP AAARRRVAED ALLDMSTSQP  360
SCSSSSMVMV EHADGNCPTD ADHQLAAPVS IPANQQDLNP GITADTNLDL GFLDNFDIDE  420
FMRSLGDLPS TSTDPCVLPA VTDTGAYLDA DAVGSSFFGQ MGSQYNGVGT GQMASSSLHR  480
GCMEPADSFV TGLNQSYAAC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-1218031113140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG140000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813463.10.0uncharacterized protein LOC112890817
TrEMBLA0A2T7E0R60.0A0A2T7E0R6_9POAL; Uncharacterized protein
STRINGPavir.Bb00848.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.22e-11NAC domain containing protein 50