PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG161500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 331aa    MW: 34830.7 Da    PI: 9.2778
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG161500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.7e-20108157255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          +++GVr+++ +gr++AeIrdp     r +r +lg+f+taeeAa+a++aar++++g
  Pavir.2KG161500.1.p 108 RFRGVRRRP-WGRFAAEIRDPQ----RgRRLWLGTFDTAEEAAAAYDAARLRIRG 157
                          69*******.**********92....46*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.787108165IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-27108165IPR001471AP2/ERF domain
SMARTSM003808.3E-29108171IPR001471AP2/ERF domain
PfamPF008471.3E-14108157IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-19109163IPR016177DNA-binding domain
PRINTSPR003677.7E-10109120IPR001471AP2/ERF domain
PRINTSPR003677.7E-10131147IPR001471AP2/ERF domain
PRINTSPR012177.3E-10163175No hitNo description
PRINTSPR012177.3E-10195211No hitNo description
PRINTSPR012177.3E-10212229No hitNo description
PRINTSPR012177.3E-10237262No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MRRPCGGVGM DPTGLKEEVR AAEEGEVSEV ARAAAAAAMA MAAPRCRVVR IIVHDEDATD  60
SSSSEDEDEE EGEEEEAGRS VKRSRVLLQI GGGGGQEEAE DDAAEGVRFR GVRRRPWGRF  120
AAEIRDPQRG RRLWLGTFDT AEEAAAAYDA ARLRIRGPGA PTNPPPAADS DPLPPPAARI  180
RIRGPGASTN PLPAADSDPL PPPPAAAPLP PRPPPPAAPL PPRPPPPPRL PQREEQPKLP  240
PPPLLPPKKQ YLPPPPPPLL PPKKRLPSPP PLPEIGKQVG AASSASPPAP PPFTPLPLWA  300
LLSGKRKKRS GCGGRVPALR TPPAEEASRA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-19104170168ATERF1
3gcc_A5e-19104170168ATERF1
5wx9_A1e-18103166973Ethylene-responsive transcription factor ERF096
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.186250.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG161500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1330073e-46AC133007.4 Oryza sativa chromosome 3 BAC OSJNBa0094J08 genomic sequence, complete sequence.
GenBankAC1391723e-46AC139172.2 Oryza sativa chromosome 3 BAC OSJNBb0042K11 genomic sequence, complete sequence.
GenBankAK0666703e-46AK066670.1 Oryza sativa Japonica Group cDNA clone:J013074E02, full insert sequence.
GenBankAK0682523e-46AK068252.1 Oryza sativa Japonica Group cDNA clone:J013145D23, full insert sequence.
GenBankAP0149593e-46AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCU4062133e-46CU406213.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C108D05, full insert sequence.