PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG161700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family M-type_MADS
Protein Properties Length: 237aa    MW: 26066.7 Da    PI: 6.9685
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG161700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.82.1e-211662147
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                         k+ien++ rqv fskRr+g++KKA+ELS+LC+a va ++fs +g+ +
  Pavir.2KG161700.1.p 16 KPIENETARQVRFSKRRQGLFKKASELSILCGAMVAAVVFSASGRSF 62
                         78****************************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.1E-31867IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.343868IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.49E-26983IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-191030IPR002100Transcription factor, MADS-box
CDDcd002651.49E-311479No hitNo description
PfamPF003192.0E-231864IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-193045IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-194566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MAKGKKSKGR KKTEIKPIEN ETARQVRFSK RRQGLFKKAS ELSILCGAMV AAVVFSASGR  60
SFSFGHPSFD DVVNRFLSPV PTDAPAPGGN EEGSMTDAVR RLNMEYLELE QSLEAEEKRK  120
ERLQEATEKL MGERVMQWLN ANIFELGLDE LQEFQKKLEE IHVIVKQKVD EVMVEGRQTP  180
RSLPHPPMEM ASTSQTPSSS LALIDGFQVS NDPLLLGGGV HGVGGLGNFP NNQNLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mnm_A5e-146751483PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
1mnm_B5e-146751483PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG161700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012699030.11e-124agamous-like MADS-box protein AGL29
TrEMBLA0A2T7EMP11e-128A0A2T7EMP1_9POAL; Uncharacterized protein
STRINGPavir.Bb00803.1.p1e-172(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.12e-27AGAMOUS-like 29