PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG166500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 383aa    MW: 39745.8 Da    PI: 8.5999
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG166500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1765e-24259321163
                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          e+elkrerrkq+NRe+ArrsR+RK++e+eeL++kv+ L++eN+aL+ el++lkk ++ +++e+
  Pavir.2KG166500.1.p 259 ERELKRERRKQSNRESARRSRLRKQQECEELARKVADLTTENSALRAELDNLKKACQDMETEN 321
                          89*********************************************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.7E-17254318No hitNo description
SMARTSM003382.2E-22259323IPR004827Basic-leucine zipper domain
PfamPF001701.5E-21259321IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.173261324IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.56E-11262317No hitNo description
CDDcd147021.53E-21264315No hitNo description
PROSITE patternPS000360266281IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MASSSDEQQP KPPEPPAAGA VVATAAAPPP QTHAEWAASL QAYYAAAGHP YAWPAQHLMA  60
AAAAGAPFGT PVPFPVYHPA YYAHASMAAG VPYPTAEAAA AAAAAAATAA EGKGKGKGGG  120
ASPEKGSSGA SSGEDASRSG DERQRGVAGT RDNDTDHKDS SAPKKRKSGN TLAEGEPSQA  180
AVVRYAAVES PYPAVKGRSA SKLPVSAPGR AALPNATPNL NIGMDFWSAS PALAVPAVQG  240
EASPGLALAR RDSVTQLDER ELKRERRKQS NRESARRSRL RKQQECEELA RKVADLTTEN  300
SALRAELDNL KKACQDMETE NSRLLGGMAY SQGPSVTTTL GMSIDPPKVQ HHDDEGQLHK  360
NTSNNSNGNY TGASHKQEAN TR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275281RRSRLRK
2275282RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.283560.0callus| leaf
Functional Description ? help Back to Top
Source Description
UniProtInteracts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG166500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9702430.0EU970243.1 Zea mays clone 342575 DNA-binding protein EMBP-1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955801.10.0DNA-binding protein EMBP-1
SwissprotP250321e-65EMBP1_WHEAT; DNA-binding protein EMBP-1
TrEMBLA0A3L6T6W40.0A0A3L6T6W4_PANMI; DNA-binding protein EMBP-1-like
STRINGPavir.Bb00931.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21603692
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.16e-24basic region/leucine zipper transcription factor 16