PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG173700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 1520aa    MW: 170158 Da    PI: 6.7663
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG173700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.92.9e-1692178290
                          EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS. CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr. 87 
                          +kvltp+dv+++  lv+p + a  +   ++   ++  t+ed++g++W+++++y+   +++++tk W++Fv+++gL +gD+v F++  g  
  Pavir.2KG173700.1.p  92 DKVLTPADVGER--LVIPEEDA-VCwpFLP---GIVFTFEDPNGKQWSFRCSYSEELRGCYMTKEWSRFVREKGLHAGDTVSFYRGlGAa 175
                          6999******86..9******9.4557433...457************************************************543444 PP

                          SEE CS
                   B3  88 sef 90 
                            +
  Pavir.2KG173700.1.p 176 GHG 178
                          555 PP
2WRKY53.93.5e-1714231482359
                           -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY    3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59  
                           D ++W K G K++ gs+ +rsYYrC ++   gC+++k ++ +++dp+++  +Y  eHnhe
  Pavir.2KG173700.1.p 1423 DSWKWEKHGEKNIFGSNLARSYYRCLHRnstGCCATKILQPNDTDPNMLSAMYIYEHNHE 1482
                           99***********************9998889***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-1987171IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-1789171IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.1E-791183IPR003340B3 DNA binding domain
CDDcd100171.68E-1893170No hitNo description
PfamPF023624.5E-1493183IPR003340B3 DNA binding domain
PROSITE profilePS508639.46122188IPR003340B3 DNA binding domain
SuperFamilySSF520584.65E-26403574IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.108.1E-25404575IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF525401.27E-39585851IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009311.6E-34630879IPR002182NB-ARC
PRINTSPR003643.9E-10631646No hitNo description
Gene3DG3DSA:3.40.50.3006.2E-5632747IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003643.9E-10701715No hitNo description
PRINTSPR003643.9E-10798812No hitNo description
SuperFamilySSF520587.14E-369141113IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.105.9E-159451126IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520587.14E-3611691379IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.2E-1311711380IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003643.9E-1013461362No hitNo description
Gene3DG3DSA:2.20.25.802.1E-1714101484IPR003657WRKY domain
PROSITE profilePS5081120.46114161484IPR003657WRKY domain
SuperFamilySSF1182908.76E-1714181484IPR003657WRKY domain
SMARTSM007747.3E-1714211483IPR003657WRKY domain
PfamPF031062.4E-1514231482IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1520 aa     Download sequence    Send to blast
MEVEPGSGGS SRCRAAEGEL QDEQGDASVE VQLDLFPGPA PRPLRVKESS SSDSGITFSV  60
GSQSSKKGGG GSRSRGDRAP PATAVGKQHL LDKVLTPADV GERLVIPEED AVCWPFLPGI  120
VFTFEDPNGK QWSFRCSYSE ELRGCYMTKE WSRFVREKGL HAGDTVSFYR GLGAAGHGRF  180
FVDWKLHADG AHRRPKQPPM ATPNLELADP CSASSIRRLS QQLVHVRTTI SPSTSSGTQV  240
SFAWLTNVRS LAADAEDCLQ DLHCRMMQAV LVVGSHEKDP NVSGNSSKAT SSSFFQSASP  300
LQLTVKSIGD KLEGLQHGRP ELSVAAPHNS SKLISVNHLV VRCILLCRGI LGIMSAAGAD  360
EVKATREIPV FASDDLTYAG RANVSMMDSP KMPANVTDPI YLLPTFIRSL LYLDLSNCSS  420
LAQVHPSLCT LHHLAALNLS RCYSLRTLPV SLGMLQKLQI LVLSNCQKLQ NLPVSLCDLS  480
KLRLLDLSGC SRLETLPYSF VTLRQLEILN LSYCKGLKEL PQPFGILQGL KYLNLSGCHG  540
LDLDVECKLA NLMCATLSPH SNIQGFADSF RDLKNHLDMS RWRKKSRVHP QCNPKAVPFH  600
TYKCHEQSII ERLLSVNFDE SVVTGDHVVI SICVVGESGM GKTDLIHRIY NDKLILDTFD  660
LRIWLPACDK KMLLGKIVEF TTFSYCCDSP MSVLEEILTE ELTGKKFLLV LDDCDNESPQ  720
FWNELLKLFN VCSKGSAVIT TTKNKEVANH MGATQTYYLS SLPKEDCFMI FHRHALGSLD  780
MKSYPPLESV GWKVVEKCGG NALCIKSLTG LLCHSEIGLS QMDMLVDGIL PALRLCYDLL  840
PSHLQQCFKF CSLFPKDYNF SKHHIVRLWI AQGFVFPEEG CQPEETGLHY FDELFCRSFF  900
QHSPFHNDNE DKFVMHELFH DLAQSVSRNE CFRSEEPFCS FPENISHLSL VPSDFKTVAL  960
IKEIKNLQSL LVVRRFFPVV RVLHGDLYVK YRFLRALNLS STDILQLPSS IRNMKYLRFL  1020
ALNNTKIKAL PFEIGQVDTL QTLELKDCCR LTELPGSTSN LTKLRHLDVR QEPGNIRVSM  1080
PHGIGQLTDL QTLTVFNIGN NLLHSSIVEL KNLSGLLGHV HITGLENIKT ADDAREANIV  1140
GKHFLEALTL EWSYSEGDMD DEMGEVIAND ILQNLQPNRN IMELVVRNYA GNQFPAWMQD  1200
SYLCNLVSVT LDNCHECSEL PYLGDLPCLK SLFIQRMNSV ESFGIESNSL AIEENHSLRF  1260
PSLEVLTLRE MYDLQFWVGI TEGDFPRICH LSISRCPKLT ELPPLLSLVH LSIHCGGQVP  1320
SFSELPSLES LKIEGFNKIR SIIFPHQLTT LKKLEISDCK ELSSMNSYSL SVSNLRVVRC  1380
PKLDLVGSSL EDHHRQQVDS GRNIPTRWSM VLKTATYTDL QVDSWKWEKH GEKNIFGSNL  1440
ARSYYRCLHR NSTGCCATKI LQPNDTDPNM LSAMYIYEHN HEFPNEPHLE LSAEPATTRK  1500
RKEPDVPSDE HTSKRQLNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C2e-356241198177758Disease resistance RPP13-like protein 4
6j5t_F2e-356241198177758Disease resistance RPP13-like protein 4
6j5t_G2e-356241198177758Disease resistance RPP13-like protein 4
6j5t_L2e-356241198177758Disease resistance RPP13-like protein 4
6j5t_O2e-356241198177758Disease resistance RPP13-like protein 4
6j5u_A2e-356241198177758Disease resistance RPP13-like protein 4
6j5v_A2e-356241198177758Disease resistance RPP13-like protein 4
6j5w_A2e-356241198177758Disease resistance RPP13-like protein 4
6j6i_C2e-356241198177758Disease resistance RPP13-like protein 4
6j6i_F2e-356241198177758Disease resistance RPP13-like protein 4
6j6i_G2e-356241198177758Disease resistance RPP13-like protein 4
6j6i_L2e-356241198177758Disease resistance RPP13-like protein 4
6j6i_O2e-356241198177758Disease resistance RPP13-like protein 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.104070.0callus| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG173700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459691.20.0uncharacterized protein LOC8057272
TrEMBLA0A1B6QAD60.0A0A1B6QAD6_SORBI; Uncharacterized protein
STRINGPavir.J20878.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125771216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.12e-23B3 family protein