PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG191400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 261aa    MW: 27964.8 Da    PI: 9.4631
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG191400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.92.3e-334195155
              G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                         kprlrWt +LHerFv+av+qLGG+ekAtPktil++m+vkgLtl h+kSHLQkYRl
  Pavir.2KG191400.1.p 41 KPRLRWTADLHERFVDAVAQLGGPEKATPKTILRTMGVKGLTLFHLKSHLQKYRL 95
                         79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.7383898IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-313896IPR009057Homeodomain-like
SuperFamilySSF466891.97E-164197IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-244196IPR006447Myb domain, plants
PfamPF002491.6E-84394IPR001005SANT/Myb domain
PfamPF143799.1E-21136182IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0010628Biological Processpositive regulation of gene expression
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MFLPGLIHHR PDGPAPVDGA PRSGAGGGPG GPSLVLTADP KPRLRWTADL HERFVDAVAQ  60
LGGPEKATPK TILRTMGVKG LTLFHLKSHL QKYRLGKQSG KEGSEQSKDG SYLLDAQTGM  120
TVSPRVPAQD VKESQEVKEA LRAQMEVQRR LHEQVEVQKR VQIRMEALQK YIDSILESAC  180
KMVTEQFASS GFSISDPNLP EISPGGVLCG PTDTLSSSVF NQLSVSSIDS HSPGGKPSPS  240
GIEGSPMLLQ KSPELKRRSS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A7e-194197157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-194197157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-194197157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-194197157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.72210.0callus| leaf| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00378DAPTransfer from AT3G24120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG191400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804279.11e-174protein PHR1-LIKE 2-like
SwissprotQ94A573e-72PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBLA0A2T7EQW61e-173A0A2T7EQW6_9POAL; Uncharacterized protein
TrEMBLA0A2T8KPV91e-172A0A2T8KPV9_9POAL; Uncharacterized protein
STRINGPavir.Bb01629.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34273873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.12e-72G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]