PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.2KG194000.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 362aa MW: 38050.6 Da PI: 6.6899

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2KG194000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.9	9.5e-38	77	131	6	60
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +cprCds ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ Pavir.2KG194000.1.p 77 PSCPRCDSPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRR 131 58***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-28	73	131	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.891	77	131	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.6E-32	78	131	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	79	115	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MKQRLSSSSA SRLAESSETL LLPPQQQQRR GGVVVTRMLS SHCDSGAQLP YAVAAAGRRA 60 AALLDHRRYR PNVEVAPSCP RCDSPNTKFC YYNNYSLSQP RYFCKGCRRY WTKGGSLRNV 120 PVGGGCRKNR RGKPARAVPV AGEAAAGGAG GAAAAFAHRS SSFPGTLRPD LLLEGMVGSP 180 SGLCQPMDAA DKPAAVHGST IDLALLYAKF LNHQPAAAVE QCAAILPESL DTLSGSSSET 240 SPNVPPPDHH PFRRAQDEFG ELSAPASADP GAAAQQCPDA RTEVLGELSF SVDQSCFDSL 300 GLPTDDGDLI LPSTWHPEAK YEPFDPLPED AMSLQGGSSG GDDVWSSALA CQGLEAALCR 360 P*

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MKQRLSSSSA SRLAESSETL LLPPQQQQRR GGVVVTRMLS SHCDSGAQLP YAVAAAGRRA  60
AALLDHRRYR PNVEVAPSCP RCDSPNTKFC YYNNYSLSQP RYFCKGCRRY WTKGGSLRNV  120
PVGGGCRKNR RGKPARAVPV AGEAAAGGAG GAAAAFAHRS SSFPGTLRPD LLLEGMVGSP  180
SGLCQPMDAA DKPAAVHGST IDLALLYAKF LNHQPAAAVE QCAAILPESL DTLSGSSSET  240
SPNVPPPDHH PFRRAQDEFG ELSAPASADP GAAAQQCPDA RTEVLGELSF SVDQSCFDSL  300
GLPTDDGDLI LPSTWHPEAK YEPFDPLPED AMSLQGGSSG GDDVWSSALA CQGLEAALCR  360
P*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2KG194000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582416	1e-118	KC582416.1 Sorghum bicolor dof25 protein (dof25) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025808971.1	0.0	uncharacterized protein LOC112887095
TrEMBL	A0A3L6SWF4	0.0	A0A3L6SWF4_PANMI; Dof zinc finger protein DOF1.8-like
STRING	Pavir.J05303.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2659	36	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	8e-37	Dof family protein

Link Out ? help Back to Top
Phytozome	Pavir.2KG194000.1.p