PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG195700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 162aa    MW: 18429.6 Da    PI: 11.1055
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG195700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.61.9e-101965248
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         ++WT+eEd +l ++++++G ++ +   ++m  gR+l +c+ rw+ +l
  Pavir.2KG195700.1.p 19 LAWTPEEDARLEHLFREHGFRHCHYMTARMVSGRSLRECRGRWRHHL 65
                         68*******************66666666666***********9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.2741369IPR017930Myb domain
SMARTSM007170.00621797IPR001005SANT/Myb domain
PfamPF002497.9E-72064IPR001005SANT/Myb domain
CDDcd001676.43E-72065No hitNo description
SuperFamilySSF466891.1E-102092IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-92067IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MGSAPVPLAA PVLRIRLPLA WTPEEDARLE HLFREHGFRH CHYMTARMVS GRSLRECRGR  60
WRHHLARGVG CWRNMSRAVH GQTSRVIRRC WREVRHNDAF LSKLWKPVST PAHQHAAGTE  120
PSSQQPVFTC CVGQCLLLTE PLLACLRNLL IQQLIALLFV S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG195700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821894.18e-65transcription factor MYB73-like
TrEMBLA0A3L6QJ997e-65A0A3L6QJ99_PANMI; Uncharacterized protein
STRINGPavir.Bb01599.1.p2e-73(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125692035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.18e-07myb domain protein 73