PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG204000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family LBD
Protein Properties Length: 211aa    MW: 21871.9 Da    PI: 6.8473
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG204000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260136.78.5e-43361351100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk+lrr+C++ Cvlapyfp ++p+kfa +h++FGasn++kll++lpee+r da+ss+vyeA ar+rdPvyG++g i +lq+q++ l
  Pavir.2KG204000.1.p  36 PCAACKILRRRCVDRCVLAPYFPPTEPHKFATAHRVFGASNIIKLLQELPEEHRADAVSSMVYEASARIRDPVYGCAGAICQLQKQVNDL 125
                          7***************************************************************************************** PP

               DUF260  91 kaelallkee 100
                          ka+la++++e
  Pavir.2KG204000.1.p 126 KAQLARAHAE 135
                          ******9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.01135136IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-4236133IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MDSSSSDTAA TAALPHGGAS TPPTSPPPQP AVVLSPCAAC KILRRRCVDR CVLAPYFPPT  60
EPHKFATAHR VFGASNIIKL LQELPEEHRA DAVSSMVYEA SARIRDPVYG CAGAICQLQK  120
QVNDLKAQLA RAHAELAGAR AQHAHLLALL CVEVAAASSP AYCAVNYPSA QLAAAAAPAA  180
QADALYVVDG GSGLQLQASP VSWADEPLWT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-443513610111LOB family transfactor Ramosa2.1
5ly0_B5e-443513610111LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
UniprotTISSUE SPECIFICITY: Expressed in young shoots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG204000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960340.11e-125LOB domain-containing protein 1
SwissprotQ9LQR05e-61LBD1_ARATH; LOB domain-containing protein 1
SwissprotQ9SK081e-60LBD11_ARATH; LOB domain-containing protein 11
TrEMBLA0A3L6SZG81e-127A0A3L6SZG8_PANMI; LOB domain-containing protein 1
STRINGPavir.J04684.1.p1e-149(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26453790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.11e-53LOB domain-containing protein 1