PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG205700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 140aa    MW: 15640 Da    PI: 12.2098
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG205700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.97.9e-121364253
                         XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1  2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53
                         ++++r+rrk++NR++ArrsR+RK++++eeL+  ++ L ae +aL ++l  l 
  Pavir.2KG205700.1.p 13 ERRRRQRRKESNRLSARRSRERKQQRLEELRGTAARLRAEKQALEERLRALA 64
                         6789*****************************************9998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.9E-9964No hitNo description
SMARTSM003384.5E-81076IPR004827Basic-leucine zipper domain
PfamPF001706.8E-81364IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.1851466IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.19E-71666No hitNo description
PROSITE patternPS0003601934IPR004827Basic-leucine zipper domain
CDDcd147027.33E-102165No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
EADHDQAADK EDERRRRQRR KESNRLSARR SRERKQQRLE ELRGTAARLR AEKQALEERL  60
RALARNGVAV CRQNARLRAE AAALARRLRE ARGLLALRRT IVAGQALSPV MMMPQPLPHQ  120
QQAAGVAPAA PLGLASLMT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11321RRRRQRRKE
22835RRSRERKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG205700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796839.15e-37ocs element-binding factor 1-like
TrEMBLA0A2T8I0G01e-35A0A2T8I0G0_9POAL; Uncharacterized protein
STRINGPavir.Ia00317.1.p1e-38(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138452429