PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.2KG215300.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 253aa MW: 28685.3 Da PI: 8.3917

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2KG215300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53.5	7.8e-17	54	133	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Yn Y+ e+GF +r +s+++++n +++++vCs++g++++ ++k + r gC ++++ +++d+ w++++++++HnH+l+ Pavir.2KG215300.1.p 54 DYYNLYSWEIGFGIRYGRSRTNSNNY-RMRQDLVCSCQGQNTSATTK---------TCRRGCPTMIRLLRTQDHGWYISRFVKDHNHDLS 133 69**************99995555.999******9997655.........8999**************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-13	54	133	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MKRSHAISGP HARIAPWEES AVSKALRAAE SSTNKLVFEP AVGTTFNSCE EAKDYYNLYS 60 WEIGFGIRYG RSRTNSNNYR MRQDLVCSCQ GQNTSATTKT CRRGCPTMIR LLRTQDHGWY 120 ISRFVKDHNH DLSDNYAENK QWNSHNQIDA ITKDFIRKLR NNNVSIGRVC SILGVADSAQ 180 AAPLRKETDV CTKLSQENMI NDLGKTLDLL QEMNDADPDM SVKFRVDSEG RLESMIWCTG 240 KINRTMNISE MQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2KG215300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822596.1	1e-120	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_025822597.1	1e-120	protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A0A1B6Q0S6	2e-91	A0A1B6Q0S6_SORBI; Uncharacterized protein
TrEMBL	A0A1W0VV91	2e-91	A0A1W0VV91_SORBI; Uncharacterized protein
STRING	Pavir.Bb01348.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP619	19	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	2e-15	FAR1-related sequence 7

Link Out ? help Back to Top
Phytozome	Pavir.2KG215300.1.p