PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG223400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 364aa    MW: 37591.4 Da    PI: 7.4694
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG223400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY795.2e-25130188259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D y+WrKYGqKe+ g++fprsY+rC  + gCp++k+v++s  dp+ +ei Y   H+++
  Pavir.2KG223400.1.p 130 QDSYTWRKYGQKEILGARFPRSYFRCGRKpGCPARKHVQQSGADPSKLEIAYFAAHTCD 188
                          8**************************999**************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-24123190IPR003657WRKY domain
SuperFamilySSF1182904.84E-22128190IPR003657WRKY domain
SMARTSM007742.8E-30129189IPR003657WRKY domain
PfamPF031065.0E-23130188IPR003657WRKY domain
PROSITE profilePS5081121.471131190IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MAAGPGSATV ERFIVGAQKS ANQLKVVLAK LLPGAGLGAR AGAGSPGSAD AVEALLSDIT  60
DSLSQALASL RLGALDTQRS PWQSSTGAAE AAAGGGGGGG GGRRSAPRRS GQRVRRDGAC  120
RMIVLQNGVQ DSYTWRKYGQ KEILGARFPR SYFRCGRKPG CPARKHVQQS GADPSKLEIA  180
YFAAHTCDDP PRSPSSPRIA PADPVPISGA RVENTAARLA PVAAAAPSAH QRCAGQPSPM  240
AGHSVVPIRT AGVLLPAAAA APAAAPSSST QHDPVADDDT AFTPSMVEEE RAELLFIPSP  300
ACSQSELLPV ERANKVEPQG PPVWMEHDDE PVIVSDFVVP FFEQSGLREE VGGVPAFFTV  360
PEM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-151291911475WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG223400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804239.11e-121probable WRKY transcription factor 54
TrEMBLA0A3L6T6H21e-146A0A3L6T6H2_PANMI; Uncharacterized protein
STRINGPavir.Bb01218.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141862125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.13e-18WRKY DNA-binding protein 55