PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG253800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 392aa    MW: 45716.7 Da    PI: 10.0392
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG253800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR160.55.2e-191897190
                 FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                         +fYn Y+ e GF +r+ + +k+++ +  t+++fvCs+eg++++++          a+ rt+Cka++++ +++d+ w++++++  HnH+++
  Pavir.2KG253800.1.p 18 EFYNLYSWEKGFGIRIGRGRKNSK-EYRTRQDFVCSCEGTEKSTTA---------ASIRTECKAMIRLLRRNDHSWYISRVVDTHNHPFS 97
                         6*****************999955.5589**********9988654.........59******************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-151897IPR004330FAR1 DNA binding domain
PfamPF105512.7E-26219311IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MFFPYKGTVF NSCDEAKEFY NLYSWEKGFG IRIGRGRKNS KEYRTRQDFV CSCEGTEKST  60
TAASIRTECK AMIRLLRRND HSWYISRVVD THNHPFSAGY GENKQWKSHS EIDPVTKDLV  120
KKLRENNISV GRICNILGVS DATSIKTIRK EFVRSLCAKL SQENLKDDIG KTMRLLEDMK  180
KTDPGLEVRF QMDGNGAMKT MLWCTGKNRV DYENFGDAIT FDTTYRTNLY SLPFGLFVGV  240
NNHFQSIVFG GVLLTSEKTD DFKWAFSNFV EIMNGKAPLT MLTDQCAAMA KAIKSTLHTT  300
RHTWCRWHVL KDAKKKLGNI YSKCKKFKHE FNKLITDEID IRRFENEWRK LLRKYRLVKN  360
KYLMRLFKHR EKWAKPYFMD IFCAGMTSTQ E*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG253800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310926.10.0protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A1B6Q0S60.0A0A1B6Q0S6_SORBI; Uncharacterized protein
STRINGPavir.J24972.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-55FAR1-related sequence 5