PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG264900.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YB
Protein Properties Length: 171aa    MW: 18815.1 Da    PI: 4.6608
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG264900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB53.17.7e-1735134697
                NF-YB   6 rflPianvsrimkkvlPana........kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 
                          ++lP a v r++k  l   a         + kda     e +  fi ++++ a+d c++ kr+tin+dd+l al ++ f ++vepl++ l
  Pavir.2KG264900.2.p  35 EELPKAIVRRLVKDKLAHVAgggegaevIVNKDAMAAFAESARIFIHYLSATANDMCKESKRQTINADDVLKALDEMEFSEFVEPLRISL 124
                          578999999999988865431111122158899999****************************************************** PP

                NF-YB  88 kkyrelegek 97 
                          +++r+ +++k
  Pavir.2KG264900.2.p 125 QEFRNKNADK 134
                          ****998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.7E-3432168IPR009072Histone-fold
PfamPF008089.7E-1036108IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471136.74E-2837166IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MPRKATKEAE PQPAAAAQEE PAPAPAAAMA EAEVEELPKA IVRRLVKDKL AHVAGGGEGA  60
EVIVNKDAMA AFAESARIFI HYLSATANDM CKESKRQTIN ADDVLKALDE MEFSEFVEPL  120
RISLQEFRNK NADKRSEANK KQKEKRRKLN EESLPQKEND PADDAEENDD *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG264900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0605591e-155BT060559.1 Zea mays full-length cDNA clone ZM_BFb0015O22 mRNA, complete cds.
GenBankEU9626971e-155EU962697.1 Zea mays clone 244791 DNA polymerase epsilon subunit 3 mRNA, complete cds.
GenBankEU9640461e-155EU964046.1 Zea mays clone 275447 DNA polymerase epsilon subunit 3 mRNA, complete cds.
GenBankKJ7283011e-155KJ728301.1 Zea mays clone pUT6581 CCAAT-DR1 transcription factor (CADR16) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801207.11e-94DNA polymerase epsilon subunit 3
TrEMBLA0A3L6QRV54e-96A0A3L6QRV5_PANMI; DNA polymerase epsilon subunit 3
STRINGPavir.Bb01701.1.p1e-117(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.19e-33nuclear factor Y, subunit B11