PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG267900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 135aa    MW: 14917.2 Da    PI: 8.8431
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG267900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62e-20961156
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                         ++y+GVr+++ +g+++AeIrd s    +  r++lg+f+taeeAa+a+++ + +++g+
  Pavir.2KG267900.1.p  9 TKYRGVRRRP-WGKYAAEIRDSSR---HgVRIWLGTFDTAEEAARAYDRSAYSMRGA 61
                         69********.**********432...25*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.40E-27970No hitNo description
PfamPF008472.8E-14960IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-311069IPR001471AP2/ERF domain
PROSITE profilePS5103223.5651068IPR001471AP2/ERF domain
SMARTSM003802.9E-321074IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-231069IPR016177DNA-binding domain
PRINTSPR003675.0E-121122IPR001471AP2/ERF domain
PRINTSPR003675.0E-123450IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MDGGEGEPTK YRGVRRRPWG KYAAEIRDSS RHGVRIWLGT FDTAEEAARA YDRSAYSMRG  60
AGAVLNFPED ARVYAAAARG SGSGSSSSRQ QQQQQQQQPS GRDVIEFEYL DDEVLQEMLR  120
NHDADGSSSA RKKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-3611141114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.152843e-32root| stem
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG267900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275191e-109KJ727519.1 Zea mays clone pUT5378 AP2-EREBP transcription factor (EREB189) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804456.14e-70ethylene-responsive transcription factor ERF096-like
SwissprotQ9LSX08e-36ERF96_ARATH; Ethylene-responsive transcription factor ERF096
TrEMBLA0A3L6T9N08e-72A0A3L6T9N0_PANMI; Uncharacterized protein
STRINGPavir.Bb01308.1.p5e-93(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43410.11e-34ERF family protein
Publications ? help Back to Top
  1. Zander M,Thurow C,Gatz C
    TGA Transcription Factors Activate the Salicylic Acid-Suppressible Branch of the Ethylene-Induced Defense Program by Regulating ORA59 Expression.
    Plant Physiol., 2014. 165(4): p. 1671-1683
    [PMID:24989234]