PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG274400.8.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 373aa    MW: 40975.7 Da    PI: 7.3692
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG274400.8.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.71.8e-11133162534
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeek 34 
                          k  rr+++NReAAr+sR+RKka+i++Le+ 
  Pavir.2KG274400.8.p 133 KTLRRLAQNREAARKSRLRKKAYIQQLETS 162
                          788************************974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003388.9E-6129184IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.1E-8131173No hitNo description
PROSITE profilePS502178.829131174IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.61E-7133167No hitNo description
PfamPF001701.6E-8133162IPR004827Basic-leucine zipper domain
PROSITE patternPS000360136151IPR004827Basic-leucine zipper domain
PfamPF141443.7E-28217289IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MMPASSTMSK ESTSYDMAEF DQSAIFLYLD GHDQEQRQTL NIFPSQPMHV AEPIPAKGVS  60
MGMVAAMLPN GNSSPPKRQE QGGQRSPAVP PPAPTVALPN SAKETKSSLS KKEAKSGGKG  120
ATSGDQERVR DPKTLRRLAQ NREAARKSRL RKKAYIQQLE TSRIRLSQLE QQVQVARVQG  180
VFLGTGEQPG FPSAPSPAVV FDMEYGRWVE EHSKLIFQLR AALNEHLADE QLQGFVNGAM  240
AQHEELLNLK GAMARADVFH LLSGVWASPA ERCFLWLGGF RPSEVIKVML KHVEPLSEGQ  300
ILGIYNLQQS VQEREEALNH SMEATQQSIS DTIAAPDVAP ATFMGHMSIA MNKVASMEGF  360
VMQWCHQLNN TI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.265925e-67root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG274400.8.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804474.10.0transcription factor TGAL7-like isoform X3
SwissprotQ6H4341e-166TGAL7_ORYSJ; Transcription factor TGAL7
TrEMBLA0A3L6TBM40.0A0A3L6TBM4_PANMI; Transcription factor TGA2-like isoform X1
STRINGSi029966m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-102bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]