PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.2KG275700.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 648aa MW: 75116.3 Da PI: 9.1408

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2KG275700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.7	6.9e-22	64	151	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 f++ YA+++GF v+k++++ks+ g + k+ fvC+k+ k + + +++r+++ rt+Ck + vk+e +++w+vt ++leHnHelap Pavir.2KG275700.1.p 64 FFKLYARKMGFAVKKDTTYKSRIIGVVDKQAFVCNKSSKGILNANP-GRKKRSNVIIRTECKVLVCVKLE-ENQWKVTAVHLEHNHELAP 151 9*************************************999998.99*****************.99************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.5E-19	64	151	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.6E-31	249	341	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.137	519	556	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 648 aa Download sequence Send to blast
MIGNAGGETM ITDDMFLPDP PNQDEIEMDN MFDEMNDPTI TEIENAARPE IGMSFGTREE 60 AFHFFKLYAR KMGFAVKKDT TYKSRIIGVV DKQAFVCNKS SKGILNANPG RKKRSNVIIR 120 TECKVLVCVK LEENQWKVTA VHLEHNHELA PSAWLVRFMK CHKYMSSSEK RFITVLQNNR 180 VPPRKVMSIF RMLRGHLRAV GFDAKDVNNL KSEESKRHRN KDIDELLELF KERQQKIPDL 240 IIRSMGDYVS FDTTFSTNVY DMPFVPIVGV DNHGKTILFG CALLKDQTTE TFQWLFQTFK 300 IANNGKEPKT VITDQDQSIG NALDIEFPMS IRRFCFWHIM KVLKQKNISY FRARKDLYKG 360 LKSAVKNSFT PQKFEASWKE VVDKYGARDN NRINYLYNIR SYWVPAYFME AFYPFSSTTR 420 SESTNTMFKG YVAHKDTIVN FFGAYENIQE KNLSTLDRCR YTSELKYPSQ WSYNGLEDHA 480 ASELKKGTAY GVVEVVKDRL FQVSRKMLYH DPEYGKDNYT VFVSEDKMEF VCSCKKKIHR 540 DGIHCCHVWK IADRMDLISM PESFVQYRWT KLADQDISLA AGQEMIVGGS KTSDAIQYCI 600 MMADVSQFCS TIAGNKQAIE LFAKEFEELK TRINTNLKFK KTTMRRM*

Sequence ? help Back to Top

Protein Sequence Length: 648 aa Download sequence Send to blast

MIGNAGGETM ITDDMFLPDP PNQDEIEMDN MFDEMNDPTI TEIENAARPE IGMSFGTREE  60
AFHFFKLYAR KMGFAVKKDT TYKSRIIGVV DKQAFVCNKS SKGILNANPG RKKRSNVIIR  120
TECKVLVCVK LEENQWKVTA VHLEHNHELA PSAWLVRFMK CHKYMSSSEK RFITVLQNNR  180
VPPRKVMSIF RMLRGHLRAV GFDAKDVNNL KSEESKRHRN KDIDELLELF KERQQKIPDL  240
IIRSMGDYVS FDTTFSTNVY DMPFVPIVGV DNHGKTILFG CALLKDQTTE TFQWLFQTFK  300
IANNGKEPKT VITDQDQSIG NALDIEFPMS IRRFCFWHIM KVLKQKNISY FRARKDLYKG  360
LKSAVKNSFT PQKFEASWKE VVDKYGARDN NRINYLYNIR SYWVPAYFME AFYPFSSTTR  420
SESTNTMFKG YVAHKDTIVN FFGAYENIQE KNLSTLDRCR YTSELKYPSQ WSYNGLEDHA  480
ASELKKGTAY GVVEVVKDRL FQVSRKMLYH DPEYGKDNYT VFVSEDKMEF VCSCKKKIHR  540
DGIHCCHVWK IADRMDLISM PESFVQYRWT KLADQDISLA AGQEMIVGGS KTSDAIQYCI  600
MMADVSQFCS TIAGNKQAIE LFAKEFEELK TRINTNLKFK KTTMRRM*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2KG275700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021319334.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A1Z5RF97	0.0	A0A1Z5RF97_SORBI; Uncharacterized protein (Fragment)
STRING	Pavir.J38677.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-70	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.2KG275700.1.p