PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG285000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 189aa    MW: 19339.2 Da    PI: 4.6857
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG285000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY37.64.4e-1211492358
                         EEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                 WRKY 23 sYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58
                         +YYrCt++   gC ++k+v+r++ dp +++++Y + H++
  Pavir.2KG285000.1.p 11 GYYRCTHRhtqGCAATKQVQRADGDPALFNVVYISAHTC 49
                         6******98999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007745.2E-10351IPR003657WRKY domain
PROSITE profilePS5081110.6481147IPR003657WRKY domain
PfamPF031068.3E-121149IPR003657WRKY domain
SuperFamilySSF1182906.93E-111149IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.0E-111150IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MVNSSFISGG GYYRCTHRHT QGCAATKQVQ RADGDPALFN VVYISAHTCV QSGSAAAAAG  60
QAAAAAQAPE HTPGAHTLLH SLTVKTEGLA AAPEEAPQGW AATAPFCLSP TAASGWCPAP  120
ERSPFSAPST SENWGASPAT SDSNQHASFP PFELVAGDVQ FEFGEVVSAL VGVPGEFHDD  180
FDISSFFA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.157431e-169stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG285000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800892.11e-90probable WRKY transcription factor 30
TrEMBLA0A3L6QPN41e-89A0A3L6QPN4_PANMI; Putative WRKY transcription factor 30
STRINGPavir.Ba02544.1.p6e-96(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.21e-14WRKY family protein