PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG287300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 412aa    MW: 43784.7 Da    PI: 9.4346
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG287300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.83.9e-27206266158
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                          +dDg++WrKYGqKe+ g+++pr+YYrCt++   gC ++k+v+r++edp +++++Y+g+H++
  Pavir.2KG287300.1.p 206 VDDGHSWRKYGQKEILGAKHPRGYYRCTHRhsqGCLATKQVQRTDEDPALFDVIYHGDHTC 266
                          59***************************98999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.458201264IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.1E-27203267IPR003657WRKY domain
SuperFamilySSF1182901.19E-24204266IPR003657WRKY domain
SMARTSM007748.0E-40206268IPR003657WRKY domain
PfamPF031063.9E-26207266IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MAHQLAQSGR SRHHARRSNP SPPRRNDALR VSLKGHSPGS WLVSLATAEL PPTRPPPLQP  60
NSHATPRQIL APSSSSSCAW RGPWRAATAA MGQRRADGDG AEPHQGAGAA AGGAPRRLRR  120
VCRHLTTEIF SLTERSIGII TAASSSSGLD ARKREYAGLA SPLPATPTSD VADGPFRSTK  180
KRKVMEKRKQ QVRVSSPRGG AGENPVDDGH SWRKYGQKEI LGAKHPRGYY RCTHRHSQGC  240
LATKQVQRTD EDPALFDVIY HGDHTCVQRP AVAAAPEHNP DANSFLQSLT AGLTVKTEGL  300
PALAADPRGW SATAPFYLST PTPASGCPAT AERSPFSAPS TSENWGVSPA TSDSNHVASY  360
LPFEDAGWRG QNELQEVVSA LVAASAPPAP AVDGLDELLD IDDVDIASFF A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-22206266868OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG287300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586250.0KU058625.1 UNVERIFIED: Panicum miliaceum WRKY10-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800891.11e-171probable WRKY transcription factor 30
TrEMBLA0A2S3GYW51e-169A0A2S3GYW5_9POAL; Uncharacterized protein
STRINGPavir.Bb02088.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.13e-36WRKY family protein