PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.2KG291600.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 104aa MW: 12039.5 Da PI: 9.1158

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2KG291600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.7	9.2e-24	17	98	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Yn+YA++vGFs+rksk+k++ ++g+ +++++vCs eg+re+e+++ + tr gC+a+++ + +++g w v+k+eleHnH la Pavir.2KG291600.1.p 17 EMYNTYARQVGFSIRKSKTKRR-QDGSLYQKHLVCSSEGHRENESSQ-------KDITRRGCDAHVQFSISREGIWTVQKVELEHNHYLA 98 58*************98876.9999**********998766.......99*****************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.3E-20	17	98	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 104 aa Download sequence Send to blast
MTPIVGMTFE SEEKAYEMYN TYARQVGFSI RKSKTKRRQD GSLYQKHLVC SSEGHRENES 60 SQKDITRRGC DAHVQFSISR EGIWTVQKVE LEHNHYLASP DKR*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.36238	1e-159	callus

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2KG291600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012699174.1	9e-48	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A3L6Q9Q9	1e-50	A0A3L6Q9Q9_PANMI; Uncharacterized protein
STRING	Sb04g005390.1	9e-49	(Sorghum bicolor)
STRING	Sb06g025940.1	1e-50	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1212	5	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	3e-19	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Pavir.2KG291600.1.p