PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG304400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 333aa    MW: 35400.6 Da    PI: 7.1784
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG304400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.12.1e-29174233159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          ++Dgy+WrKYGqK+ ++++ pr+Y+rC++a +Cpvkkkv+rsaed +v++ tYegeHnh+
  Pavir.2KG304400.1.p 174 VKDGYQWRKYGQKVTRDNPSPRAYFRCAFApSCPVKKKVQRSAEDSSVLVATYEGEHNHQ 233
                          58***************************99****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-28170235IPR003657WRKY domain
SuperFamilySSF1182904.32E-25171235IPR003657WRKY domain
SMARTSM007744.6E-34174234IPR003657WRKY domain
PfamPF031062.7E-24175233IPR003657WRKY domain
PROSITE profilePS5081126.544176235IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MLLMDSARRA GCSPVCLDLS VGLSPSPPKT GAGMAADPPA GGCRMASSMT DEQARTLEAK  60
FTQVSEENRR LSERIAHLYA SQIARTSPDS ADSTRASQAA SPPPLAESRK RNRDSVDDPP  120
SSGDADADAD ASGRAEAVES PRPSDAFEFE GSCRRIKVSR VCTRIDPSDT SLTVKDGYQW  180
RKYGQKVTRD NPSPRAYFRC AFAPSCPVKK KVQRSAEDSS VLVATYEGEH NHQCPTRAGE  240
LPSCAARGGP VPCSISINSS GPTITLDLTK NGADGVRVLD ATGAPDLKKL CQEVASVEFR  300
TALVEQMASS LTRDSKFTDA LAAAILKQLP DY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-201742351474WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.14899e-47leaf| root
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG304400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (By similarity). Induced by pathogen infection (e.g. M.grisea and X.oryzae pv. oryzae (Xoo)) (PubMed:16528562). Accumulates after treatment with benzothiadiazole (BTH) and salicylic acid (SA) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000269|PubMed:16528562}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802072.10.0WRKY transcription factor WRKY76-like
SwissprotQ6IEK51e-127WRK76_ORYSI; WRKY transcription factor WRKY76
TrEMBLA0A3L6QW120.0A0A3L6QW12_PANMI; WRKY transcription factor 18-like
STRINGPavir.Bb02115.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66603552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.14e-52WRKY DNA-binding protein 18