PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG306300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ZF-HD
Protein Properties Length: 213aa    MW: 22204.2 Da    PI: 10.0634
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG306300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer77.32.1e-243578547
          ZF-HD_dimer  5 rYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACg 47
                          Y+eClkNhAaslGghavDGCgEfmps+g++ +++++lkCaACg
  Pavir.2KG306300.1.p 35 LYRECLKNHAASLGGHAVDGCGEFMPSPGANpADPTSLKCAACG 78
                         7******************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.7E-193578IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-173678IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152321.1273687IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015667.5E-233678IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.51E-1689156IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-2890157IPR009057Homeodomain-like
TIGRFAMsTIGR015651.6E-2398154IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MEAMDVKYKP LMFPNGAAVK KVKPAAVAPA AGEPLYRECL KNHAASLGGH AVDGCGEFMP  60
SPGANPADPT SLKCAACGLP SAQLTPSSAP PPGAAMPRKR FRTKFTAEQK QRMQELSERL  120
GWRLQKRDEA IVDEWCRDIG VGKGVFKVWM HNNKHNFLGG HSARRSASSS APGAAAPSFN  180
IGFNINGAAS SAPTATAGHP DNVNGASSPQ SA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A2e-20981561775ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.33511e-130callus
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG306300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9678921e-117EU967892.1 Zea mays clone 306859 ZF-HD homeobox protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012698877.17e-70zinc-finger homeodomain protein 9
SwissprotQ6ER211e-42ZHD9_ORYSJ; Zinc-finger homeodomain protein 9
TrEMBLA0A0E0QRE29e-82A0A0E0QRE2_ORYRU; Uncharacterized protein
STRINGORUFI09G10950.11e-82(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36463374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60480.17e-25homeobox protein 26