PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG318700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HSF
Protein Properties Length: 189aa    MW: 21176.8 Da    PI: 7.9658
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG318700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.76.1e-36471382102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y++++d++++ ++sws+++nsfvv+d++ fa+ +Lp++Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g++
  Pavir.2KG318700.1.p  47 FLTKTYDMVDDAATDPIVSWSTTNNSFVVWDPHAFATVLLPRHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQR 127
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++i+r+k 
  Pavir.2KG318700.1.p 128 HLLKNIRRRKP 138
                          ********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.2E-3943136IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.9E-6443136IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.52E-3743136IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.5E-204770IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.3E-3247136IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-208597IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434086110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-2098110IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MDPVLNPVKE ESHGDGGLLP GAAAGDGPSA AAPKPMEGLH DAGPPPFLTK TYDMVDDAAT  60
DPIVSWSTTN NSFVVWDPHA FATVLLPRHF KHNNFSSFVR QLNTYGFRKV DPDRWEFANE  120
GFLRGQRHLL KNIRRRKPPA QNASNQQSLG SYLEVGHFGY DAEIDRLKRD KQLLMAEVVK  180
LRQEQQNTK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-28121362129Heat shock factor protein 1
5d5v_B3e-28121362129Heat shock factor protein 1
5d5v_D3e-28121362129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG318700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0560061e-171BT056006.1 Zea mays full-length cDNA clone ZM_BFc0120E04 mRNA, complete cds.
GenBankEU9567001e-171EU956700.1 Zea mays clone 1571069 heat shock factor protein HSF30 mRNA, complete cds.
GenBankJX4699681e-171JX469968.1 Zea mays subsp. mays clone UT3231 HSF-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799458.11e-135heat stress transcription factor A-2b-like
SwissprotQ6VBB21e-112HFA2B_ORYSJ; Heat stress transcription factor A-2b
TrEMBLA0A2T7ELE01e-134A0A2T7ELE0_9POAL; Uncharacterized protein
STRINGPavir.J18081.1.p1e-139(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.15e-79heat shock transcription factor A2
Publications ? help Back to Top
  1. Rezaei MK,Shobbar ZS,Shahbazi M,Abedini R,Zare S
    Glutathione S-transferase (GST) family in barley: identification of members, enzyme activity, and gene expression pattern.
    J. Plant Physiol., 2013. 170(14): p. 1277-84
    [PMID:23664583]