PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG329600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 292aa    MW: 30744.3 Da    PI: 6.6257
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG329600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2667.6e-21114163255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ +l+g
  Pavir.2KG329600.1.p 114 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDQAAYRLRG 163
                          59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.45E-30113173No hitNo description
SMARTSM003801.5E-35114177IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-23114173IPR016177DNA-binding domain
PROSITE profilePS5103223.354114171IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-33114173IPR001471AP2/ERF domain
PRINTSPR003672.5E-11115126IPR001471AP2/ERF domain
PfamPF008477.2E-15115163IPR001471AP2/ERF domain
PRINTSPR003672.5E-11137153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MAAAIDLSGE ELMRALEPFI RDASAPHESS PLLQHPHPLS PTSPFSFPHA AAAAAYGGGY  60
PFAAAAEGAG QLSPAQMQYI QARLHLQAQS SSVLGPRAQP MKVSSAAPAR PQKLYRGVRQ  120
RHWGKWVAEI RLPRNRTRLW LGTFDTAEEA ALAYDQAAYR LRGDAARLNF PDNAASRGPL  180
HASVDAKLQQ LCQSIAASKK GAKKSAPAAA TSSAPTSNCS SPSSDDASSS CLESAAESSC  240
PSPSPSASPE SAVPEMQQLD FSEAPWDEAA GFALAKYPSY EIDWDSLLAA N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-20113171463ATERF1
3gcc_A3e-20113171463ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.79510.0callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG329600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278360.0KJ727836.1 Zea mays clone pUT5789 AP2-EREBP transcription factor (EREB109) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956678.11e-165ethylene-responsive transcription factor RAP2-13
TrEMBLK3ZVQ31e-164K3ZVQ3_SETIT; Uncharacterized protein
STRINGSi030684m1e-165(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.13e-36related to AP2 4