PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG346400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 213aa    MW: 22460.2 Da    PI: 5.5968
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG346400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.4e-05114136123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C+k F ++  L  H++ H
  Pavir.2KG346400.1.p 114 FSCTYCDKKFYSSQALGGHQNAH 136
                          89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.7E-6102149No hitNo description
PROSITE profilePS5015711.385114141IPR007087Zinc finger, C2H2
PROSITE patternPS000280116136IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MTYLITLCRL SLHTLARVVQ VVYTYLSIWA GIGAMEQHNS TLIIPPSSSE IAAPPPILSP  60
PWGRPQLCPA VLSLHAMDPN SEGGGGGGEG EGDLDLNLSL QPSLAPEPEP PGYFSCTYCD  120
KKFYSSQALG GHQNAHKFER SVAKRARELA AARRPAGHGG ESGGATDEEA RRGKELGIAA  180
QGSTASSSTQ QIGEAPEARR DLTEEIDLSL KL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG346400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9687006e-59EU968700.1 Zea mays clone 323547 zinc finger protein 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803137.13e-82zinc finger protein 2-like
TrEMBLA0A2T7ESI42e-88A0A2T7ESI4_9POAL; Uncharacterized protein
STRINGPavir.Bb02239.1.p1e-153(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.11e-12zinc finger protein 2