PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG347700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 398aa    MW: 42298.1 Da    PI: 5.0309
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG347700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.8e-19130179255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+G+r+++ +g+W+AeIrdps+     r++lg++ taeeAa+a++a ++k++g
  Pavir.2KG347700.1.p 130 QYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTYNTAEEAARAYDAEARKIRG 179
                          69*******.**********965...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.5E-32130189IPR001471AP2/ERF domain
PROSITE profilePS5103223.933130187IPR001471AP2/ERF domain
SMARTSM003801.2E-37130193IPR001471AP2/ERF domain
CDDcd000182.58E-31130188No hitNo description
SuperFamilySSF541712.29E-22130189IPR016177DNA-binding domain
PfamPF008476.7E-12131179IPR001471AP2/ERF domain
PRINTSPR003672.6E-11131142IPR001471AP2/ERF domain
PRINTSPR003672.6E-11153169IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MCGGAILSGF IRPSGPAAKK QQQQLLLQHQ PRRVTADLLW PGAGRKGAPV GDDFEADFRE  60
FVRGLGEGDG AGDVGDDDEV VEVPPPEPAM FAFAAAAKAA APAVDGVMTP KTAQHDEPTA  120
TSAKRNRKNQ YRGIRQRPWG KWAAEIRDPS KGVRVWLGTY NTAEEAARAY DAEARKIRGK  180
KAKVNFPDEA ADVQKSILKP TTANPTKLTP PPKACAGETF SNLNNGDNDL FAMFAFSESK  240
VPVKPAEGAS FLPAVKPLGP TKRSAENMLS DQSSNSYGSS DFGWDDETMT SDYTSVFAPN  300
NAVAAYANPA YLQGQGEASK RMRNNYGVAV PQGNGAPNLA QGMSGFGSEM NYLPLPYVES  360
SSDTSMDSLL QNHAPQDGAS SGDLWSLDEL LMAAGAY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-19129187160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-19130187563ATERF1
3gcc_A1e-19130187563ATERF1
5wx9_A3e-191301891474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1260267TKRSAENM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.25110.0callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG347700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800946.10.0ethylene-responsive transcription factor 1-like
TrEMBLA0A3L6T5380.0A0A3L6T538_PANMI; Ethylene-responsive transcription factor 1-like
STRINGPavir.Bb02257.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112003142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.23e-28related to AP2 12