PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG349600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 484aa    MW: 52106.7 Da    PI: 9.3558
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG349600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM96.73.5e-3081392127
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratk..sgyWkatg 87 
                          p GfrF+P+++elv++yL ++++g++   +  + e+++y ++P++L +  + +++++ewyf s+r++ y +g r+ r+t+  +g+Wka+ 
  Pavir.2KG349600.1.p   8 PIGFRFKPKEDELVDYYLLPRLQGRPAVPNGSVVEANVYACHPETLINehRGAGRQDEWYFVSPRARMYGNGVRPARKTRdgRGRWKAST 97 
                          89************************777688**************74224444667********************99955677****9 PP

                  NAM  88 kdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127
                           +kev +   ++ ++ +k +L +++g+ +k ++t+W+m e +
  Pavir.2KG349600.1.p  98 ATKEVAQVvvRNGVKFCKSVLNYFEGNPKKETRTKWIMLEIT 139
                          99999988778889************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.12E-366167IPR003441NAC domain
PROSITE profilePS5100536.7737167IPR003441NAC domain
PfamPF023652.3E-158138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MEGGGGYPIG FRFKPKEDEL VDYYLLPRLQ GRPAVPNGSV VEANVYACHP ETLINEHRGA  60
GRQDEWYFVS PRARMYGNGV RPARKTRDGR GRWKASTATK EVAQVVVRNG VKFCKSVLNY  120
FEGNPKKETR TKWIMLEITV PEYEVKLDRP GARNILDEYV MCKIYVSPQH KKKSDDDDDD  180
DVEGTSSACE EGEEACSSTQ HGQVTAEPDL SDKQAGKRPM VEQPLQPARK QARRGSLSIG  240
STQSSCSTSN AAAPTGLCYR GGPGAQYGLQ LQPPATMQRP AGAHSGQAPA TPPAGACGGR  300
GLGGQMPALR PVIYQPFSDL TGAPLGQMEM ATVTRPPNPA ARRPSFPGSP PPRSPGAASI  360
FRPQVSLKCF YDQNYRAVPQ PPAHSFSAQL QRQDAFLPPQ QMQPFFIGDA SRRAGAAAIP  420
RGPPYNGHPY YQPRGSLTPA ADGRGGAAIA GTGAPRLNCN TSLSVAEGDK LNGSQCLRMI  480
LKE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-17816518163NO APICAL MERISTEM PROTEIN
1ut4_B3e-17816518163NO APICAL MERISTEM PROTEIN
1ut7_A3e-17816518163NO APICAL MERISTEM PROTEIN
1ut7_B3e-17816518163NO APICAL MERISTEM PROTEIN
4dul_A3e-17816518163NAC domain-containing protein 19
4dul_B3e-17816518163NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG349600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801595.10.0NAC domain-containing protein 2-like
TrEMBLA0A2T7ET240.0A0A2T7ET24_9POAL; Uncharacterized protein
STRINGPavir.Bb02323.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143612024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.17e-22NAC domain containing protein 52