PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG349700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HSF
Protein Properties Length: 349aa    MW: 36840.3 Da    PI: 7.763
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG349700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.23.4e-35251182103
                          HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
         HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                          Fl+k+y++++d+++++++sw  ++ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+kv  e+         weF+++ F+kg+
  Pavir.2KG349700.1.p  25 FLTKTYQLVDDPATDHIVSWGdDRVSTFVVWRPPEFARDILPNYFKHNNFSSFVRQLNTYGFRKVVPER---------WEFANEFFRKGE 105
                          9********************6667*****************************************999.........************ PP

                          XXXXXXXXXXXXX CS
         HSF_DNA-bind  91 kellekikrkkse 103
                          k+ll++i+r+k++
  Pavir.2KG349700.1.p 106 KQLLCEIHRRKTS 118
                          **********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.6E-3614110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.9E-5821115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.45E-3122115IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.4E-192548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.2E-3025115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-196476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-197789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MERCGSWECD AAAQAAAQKA VPAPFLTKTY QLVDDPATDH IVSWGDDRVS TFVVWRPPEF  60
ARDILPNYFK HNNFSSFVRQ LNTYGFRKVV PERWEFANEF FRKGEKQLLC EIHRRKTSAS  120
AASPSPPPFF GPPHFPLFHP GASHPHQFVG GDDGVAMAAA AHGMGVAFPH PHWRDPHAAA  180
PELAHMRKLY NDIIYFVQNH VRPVAPSPAA AAFLQGLGLQ ARKKPPATTP VAAAAGLNNS  240
GGSTTSSSSL TIAEEPSPPP QQQADKSGGA GEAGSCGTAR SAAAPTMLFG VHLSAAPGAK  300
RPASPEEDEH EPATSPARKP RLALDAGADL SLSVAAPPSA ASSPASTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-222112017125Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG349700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3560021e-165AK356002.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1028L19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803544.11e-164heat stress transcription factor B-4c-like
SwissprotQ67U941e-126HFB4C_ORYSJ; Heat stress transcription factor B-4c
TrEMBLA0A2T7ET321e-165A0A2T7ET32_9POAL; Uncharacterized protein
STRINGSi030056m1e-146(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.12e-57heat shock transcription factor B4