PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG356400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 218aa    MW: 23049 Da    PI: 8.5175
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG356400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.32.8e-133177354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                         r+h+e+Er+RR+riN  +++Lr+l+P a      +++Ka+ L ++v+++++L
  Pavir.2KG356400.1.p 31 RSHSEAERKRRQRINAHLATLRTLVPAA-----SRMDKAALLGEVVRHVREL 77
                         68*************************9.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-132082IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.8722877IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.27E-113178No hitNo description
Gene3DG3DSA:4.10.280.109.7E-153180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-113177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-123483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2606.0E-5127187No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MVPVRSDEAD VAMDGECSPP PPPATRSAPS RSHSEAERKR RQRINAHLAT LRTLVPAASR  60
MDKAALLGEV VRHVRELRGE ADAAAAGAAV AVPGEGDEVG VEEGQHCCCH GGAGGERDRA  120
RRVRAWVCCA DRPGLMSELG RAVRSVSARA VRAEIATVGG RTRSVLELDV GGQHDGEGTS  180
SRPALQAALR AVLLSREELL AAECYKRQRF SGHLARV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13641ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG356400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279680.0KJ727968.1 Zea mays clone pUT6081 bHLH transcription factor (bHLH169) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799424.11e-118transcription factor bHLH30-like
TrEMBLA0A1E5W6B91e-121A0A1E5W6B9_9POAL; Uncharacterized protein
STRINGSi033077m1e-113(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41143569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.13e-11bHLH family protein