PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG376400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family DBB
Protein Properties Length: 289aa    MW: 31155.2 Da    PI: 6.2724
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG376400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.93.6e-071441431
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedCll 31
                         ++C+ +e  ++ lfC  ++  lC+ C +
  Pavir.2KG376400.1.p 14 TICDVCEGAPAVLFCAADEAALCRACDE 41
                         68************************87 PP
2zf-B_box19.42.2e-06128167237
             zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 
                          +  +C+ +e  ++ ++Ce +++ lC +C ++ H g    H
  Pavir.2KG376400.1.p 128 KLARCDICEIFPAFFHCEIDGTSLCLSCDMTVHVGgkrtH 167
                          6789*****************************6655556 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003360.0121151IPR000315B-box-type zinc finger
PROSITE profilePS501198.5741141IPR000315B-box-type zinc finger
CDDcd000211.94E-61443No hitNo description
SMARTSM003366.5E-7127172IPR000315B-box-type zinc finger
CDDcd000218.00E-5131160No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MTLAAGAEGV GMRTICDVCE GAPAVLFCAA DEAALCRACD EKVISAPRSP PYPLVSSSSF  60
SQIGRERCST GRAHGAIVGV ILLSVGWALR SRDLLLLDCE RAWWMSGVHM CNKLASRHVR  120
VGLANSNKLA RCDICEIFPA FFHCEIDGTS LCLSCDMTVH VGGKRTHGRY LLLRQSVEFP  180
GDKLGHMDDD VAMQSKDPEN QIDQKKPPHS AIKEQMANHH SSSDDPASDG NCDDQLNLNS  240
KMIDLNMRPV RTNGQGSNSQ TQGVDVSMNN HDSPGVVPTS NYEGDANK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.37030.0callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG376400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957435.11e-117B-box zinc finger protein 19 isoform X1
RefseqXP_004957436.11e-118B-box zinc finger protein 19 isoform X2
TrEMBLA0A0E0B5L01e-125A0A0E0B5L0_9ORYZ; Uncharacterized protein
STRINGPavir.J28736.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103342225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.32e-60DBB family protein