PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG376400.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family DBB
Protein Properties Length: 224aa    MW: 24103 Da    PI: 5.4969
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG376400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.46.2e-081444434
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
                         ++C+ +e  ++ lfC  ++  lC+ C ++ H
  Pavir.2KG376400.2.p 14 TICDVCEGAPAVLFCAADEAALCRACDEKVH 44
                         68**************************998 PP
2zf-B_box201.5e-0663102237
             zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 
                          +  +C+ +e  ++ ++Ce +++ lC +C ++ H g    H
  Pavir.2KG376400.2.p  63 KLARCDICEIFPAFFHCEIDGTSLCLSCDMTVHVGgkrtH 102
                          6789*****************************6655556 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.2E-111158IPR000315B-box-type zinc finger
PROSITE profilePS501199.941158IPR000315B-box-type zinc finger
PfamPF006431.4E-61452IPR000315B-box-type zinc finger
CDDcd000212.12E-81456No hitNo description
SMARTSM003366.5E-762107IPR000315B-box-type zinc finger
CDDcd000218.61E-56695No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MTLAAGAEGV GMRTICDVCE GAPAVLFCAA DEAALCRACD EKVHMCNKLA SRHVRVGLAN  60
SNKLARCDIC EIFPAFFHCE IDGTSLCLSC DMTVHVGGKR THGRYLLLRQ SVEFPGDKLG  120
HMDDDVAMQS KDPENQIDQK KPPHSAIKEQ MANHHSSSDD PASDGNCDDQ LNLNSKMIDL  180
NMRPVRTNGQ GSNSQTQGVD VSMNNHDSPG VVPTSNYEGD ANK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.37030.0callus| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG376400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957436.11e-142B-box zinc finger protein 19 isoform X2
SwissprotC0SVM56e-65BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A2T7EV091e-150A0A2T7EV09_9POAL; Uncharacterized protein
STRINGPavir.J28736.1.p1e-157(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.12e-67DBB family protein